Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013706.1

Orthogroup ID

OG0003151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 472

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013706.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggagcacctaaccacttggtccagtgctcccagactccactctcaccaccaccgcctctttgcttccaatgcaaggctccggagccgaagccccaaccgtctcaattggcgaatgctagggcttcggaggggcggtgctccgtcggcggtgaaggcaagcgacggaggcgcggcggtggatacagcggtggccgagaggccgaaactgcgtcgttttcaggtctccgaaggtcatccgactccctttggcgccacgctccgcgacggtggggttaacttcgctgtctacgccggcaatgccgtttccgccactctctgtttgatcactctcgccgatttagagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0010368 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

116

Amino Acids

12.57

Weight (kDa)

11.3

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39930 AT2G39930 AT2G39930
fragaria_vesca	FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440
malus_domestica	MD13G1236000.v1.1 MD16G1240700.v1.1 MD16G1240800.v1.1 MD16G1241000.v1.1
prunus_persica	Prupe.1G067700_v2.0.a1 Prupe.1G067700_v2.0.a1
pyrus_communis	pycom13g20870 pycom13g20880 pycom13g21910 pycom16g20170
rosa_chinensis	RchiOBHm_Chr4g0398221 RchiOBHm_Chr5g0038481
rosa_laevigata	RLG00000009377
rosa_multiflora	Rmu_sc0013706.1_g000001 Rmu_sc0020611.1_g000004 Rmu_sc0032626.1_g000001 Rmu_ssc0000049.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343210
rosa_rugosa	Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh4AG084200 Rh4BG081600 Rh4CG091500 Rh4CG091600 Rh4DG076700
rosa_wichuraiana	Rw4G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	2 cut(s)	173, 264
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	8 cut(s)	55, 135, 149, 173, 176, 188, 262, 309
AcoI	YGGCCR	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	75
Alw21I	GWGCWC	3 cut(s)	9, 31, 142
Alw26I	GTCTC	2 cut(s)	107, 229
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	2 cut(s)	192, 200
AspLEI	GCGC	2 cut(s)	173, 254
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	38, 163
AvaII	GGWCC	1 cut(s)	21
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BanI	GGYRCC	1 cut(s)	251
Bbv12I	GWGCWC	3 cut(s)	9, 31, 142
BceAI	ACGGC	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	107, 229
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	3 cut(s)	80, 86, 253
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	81
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	173, 264
BshFI	GGCC	2 cut(s)	194, 202
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	3 cut(s)	9, 31, 142
BsiSI	CCGG	2 cut(s)	82, 294
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	107, 229
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	194, 202
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	9, 31, 142
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	8 cut(s)	55, 135, 149, 173, 176, 188, 262, 309
BspANI	GGCC	2 cut(s)	194, 202
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	173, 264
BspLI	GGNNCC	3 cut(s)	80, 86, 253
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	1 cut(s)	324
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	101, 269
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	160, 295
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	173, 264
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	173, 254
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	107, 229
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 146, 155, 168, 208, 290, 299, 308
BstUI	CGCG	2 cut(s)	173, 264
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	194, 202
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	160, 295
CfoI	GCGC	2 cut(s)	173, 254
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	200
CviJI	RGCY	6 cut(s)	79, 87, 93, 124, 194, 202
CviKI_1	RGCY	6 cut(s)	79, 87, 93, 124, 194, 202
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	2 cut(s)	172, 253
GluI	GCNGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	194, 202
HapII	CCGG	2 cut(s)	82, 294
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	173, 254
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	2 cut(s)	171, 252
HinP1I	GCGC	2 cut(s)	171, 252
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	36, 241
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	82, 294
HphI	GGTGA	2 cut(s)	38, 163
Hpy166II	GTNNAC	2 cut(s)	277, 289
Hpy188I	TCNGA	3 cut(s)	129, 229, 240
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	277, 289
Hpy99I	CGWCG	4 cut(s)	148, 167, 216, 269
HpyAV	CCTTC	2 cut(s)	148, 224
HpyCH4III	ACNGT	2 cut(s)	101, 269
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 146, 155, 168, 208, 290, 299, 308
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	2 cut(s)	171, 252
KasI	GGCGCC	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	324
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	6 cut(s)	4, 34, 84, 84, 145, 264
LpnPI	CCDG	5 cut(s)	37, 46, 95, 206, 307
MaeI	CTAG	1 cut(s)	119
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	3 cut(s)	9, 31, 142
MluCI	AATT	1 cut(s)	106
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	30, 235
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	68, 123, 161, 192
MroI	TCCGGA	1 cut(s)	81
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	82, 294
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	120
MvnI	CGCG	2 cut(s)	173, 264
MwoI	GCNNNNNNNGC	8 cut(s)	71, 146, 155, 168, 208, 290, 299, 308
NaeI	GCCGGC	1 cut(s)	295
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	1 cut(s)	324
NgoMIV	GCCGGC	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	80, 86, 253
NmeAIII	GCCGAG	1 cut(s)	220
PctI	GAATGC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	30, 235
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	2 cut(s)	30, 235
PspN4I	GGNNCC	3 cut(s)	80, 86, 253
PspPI	GGNCC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	2 cut(s)	30, 235
SduI	GDGCHC	3 cut(s)	9, 31, 142
SetI	ASST	3 cut(s)	12, 225, 235
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	8 cut(s)	55, 135, 149, 173, 176, 188, 262, 309
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	101, 269
TasI	AATT	1 cut(s)	106
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	132, 180
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.