Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

2055818 .. 2056585

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATCGACCTTGCCCACATCAACTCCGCTGCCCACCGCCCCAAAAACTTTGACCAAGTGAAATCGGCCACCAAAAACTTGGGTTTCCTCCAAGTAACCAACCACGGGGTGCCCGTTTCTGTTTTGGGCGAAACGGTCAACGCGATCAAAGCGTTCCACGACCAGCCCCATGAGGTCAAAGCCAAGTACTACAAGCGAGAGGAGGGAAAGGGGGTCATGTATGCTAGCAACAACGACTTGTACCGCAAGACGGCTGCCAGCTGGCACGACTCGTTACAAGTGTGGATGAGTCCAGAGAGGCCGGAGGTGGAGGAGATACCTGAGACTTGTAGGGAAGAGGTGGTTGCATGGGATTTCAAAGCAACCAAGGTGGCAACGGGCGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAGGGAAGGAGGTTTAAGGAGCTCACCTTTTCGGATACGAGGGTGCTTGTGGCGCATTGCTATCCTTATTGTCCCCAGCCTGATCGAACGGTGGGGATTACTGCACATACTGATCCTGGGATTATAACTGTTTTGTTGCAGAATCATGTGCCTGGGTTGCAAGTTAGGCATGGTAGTGAGTGGTTGGATGTGAAGCCCATGCCTGGAGGTTTAATTATTAACGTTGGAGACTTGCTTCAAGTAAATCCAACTTTGACAATAGCATGTTCATATTTTTTCTTGCACGTACCATTTCTCGTCCAACTACATAAATCGGGTGATATAGTTTTAATTCTGCAACAAGAGTATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

256

Amino Acids

28.59

Weight (kDa)

6.17

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 98	3.6e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	153 - 219	8.5e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	109
AccII	CGCG	1 cut(s)	143
AciI	CCGC	3 cut(s)	27, 37, 244
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	3 cut(s)	188, 242, 702
AfiI	CCNNNNNNNGG	3 cut(s)	105, 250, 617
AgsI	TTSAA	2 cut(s)	358, 653
AjnI	CCWGG	3 cut(s)	529, 565, 616
AluBI	AGCT	2 cut(s)	261, 436
AluI	AGCT	2 cut(s)	261, 436
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	317, 636
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	66, 299
ApeKI	GCWGC	2 cut(s)	29, 254
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	430, 743
AsuNHI	GCTAGC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	16, 241
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	3 cut(s)	531, 567, 618
BciVI	GTATCC	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	317, 636
BfaI	CTAG	2 cut(s)	225, 766
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	30, 255
BlsI	GCNGC	2 cut(s)	31, 256
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	531, 567, 618
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	3 cut(s)	531, 567, 618
BmtI	GCTAGC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	700
BsaJI	CCNNGG	4 cut(s)	103, 366, 530, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 250, 617
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	3 cut(s)	531, 567, 618
BseDI	CCNNGG	4 cut(s)	103, 366, 530, 566
BseGI	GGATG	2 cut(s)	291, 607
BseLI	CCNNNNNNNGG	3 cut(s)	105, 250, 617
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	215, 326
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	16, 241
BseYI	CCCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	68, 301
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	105, 250, 617
BsmAI	GTCTC	2 cut(s)	317, 636
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	68, 301
Bsp1286I	GDGCHC	2 cut(s)	114, 438
Bsp143I	GATC	4 cut(s)	3, 144, 496, 526
BspACI	CCGC	3 cut(s)	27, 37, 244
BspANI	GGCC	2 cut(s)	68, 301
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	469
BssECI	CCNNGG	4 cut(s)	103, 366, 530, 566
BssMI	GATC	4 cut(s)	3, 144, 496, 526
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	531, 567, 618
Bst4CI	ACNGT	3 cut(s)	136, 505, 544
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	226, 259, 263
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	291, 607
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	6, 147, 499, 529
BstMAI	GTCTC	2 cut(s)	317, 636
BstMBI	GATC	4 cut(s)	3, 144, 496, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 466, 571, 580
BstNI	CCWGG	3 cut(s)	531, 567, 618
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	3 cut(s)	529, 565, 616
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	16, 241
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	68, 301
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	291, 607
Cac8I	GCNNGC	3 cut(s)	226, 259, 263
CfoI	GCGC	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	187, 241, 701
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	7 cut(s)	170, 217, 348, 560, 584, 613, 678
CviJI	RGCY	9 cut(s)	68, 166, 182, 254, 261, 301, 436, 493, 610
CviKI_1	RGCY	9 cut(s)	68, 166, 182, 254, 261, 301, 436, 493, 610
CviQI	GTAC	3 cut(s)	187, 241, 701
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	5, 146, 498, 528
DpnII	GATC	4 cut(s)	3, 144, 496, 526
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	529, 565, 616
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	7 cut(s)	173, 220, 351, 563, 587, 616, 681
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	7 cut(s)	169, 216, 347, 559, 583, 612, 677
Fnu4HI	GCNGC	2 cut(s)	30, 255
FokI	GGATG	2 cut(s)	298, 614
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	30, 255
FspBI	CTAG	2 cut(s)	225, 766
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	30, 255
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	68, 301
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	7 cut(s)	173, 220, 351, 563, 587, 616, 681
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	269, 289, 556
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	430, 743
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	400, 448
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	395, 414
HpyCH4III	ACNGT	3 cut(s)	136, 505, 544
HpyCH4IV	ACGT	2 cut(s)	636, 699
HpyCH4V	TGCA	6 cut(s)	347, 518, 553, 574, 697, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 466, 571, 580
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	636, 699
Hsp92II	CATG	7 cut(s)	173, 220, 351, 563, 587, 616, 681
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	4 cut(s)	3, 144, 496, 526
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	16, 241
MaeI	CTAG	2 cut(s)	225, 766
MaeII	ACGT	2 cut(s)	636, 699
MaeIII	GTNAC	2 cut(s)	94, 273
MalI	GATC	4 cut(s)	5, 146, 498, 528
MboI	GATC	4 cut(s)	3, 144, 496, 526
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	114, 438
MluCI	AATT	2 cut(s)	627, 744
MlyI	GAGTC	2 cut(s)	263, 298
MmeI	TCCRAC	5 cut(s)	393, 579, 619, 686, 739
MseI	TTAA	4 cut(s)	429, 626, 633, 743
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	29, 261
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	3 cut(s)	531, 567, 618
MvaI	CCWGG	3 cut(s)	531, 567, 618
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	149, 466, 571, 580
NdeII	GATC	4 cut(s)	3, 144, 496, 526
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	7 cut(s)	173, 220, 351, 563, 587, 616, 681
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 140
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	31, 256
PleI	GAGTC	2 cut(s)	263, 297
PpsI	GAGTC	2 cut(s)	263, 297
Ppu21I	YACGTR	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	636
Psp6I	CCWGG	3 cut(s)	529, 565, 616
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	3 cut(s)	529, 565, 616
PspN4I	GGNNCC	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	3 cut(s)	188, 242, 702
RsaNI	GTAC	3 cut(s)	187, 241, 701
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	4 cut(s)	429, 626, 633, 743
SatI	GCNGC	2 cut(s)	30, 255
Sau3AI	GATC	4 cut(s)	3, 144, 496, 526
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	263, 298
ScrFI	CCNGG	3 cut(s)	531, 567, 618
SduI	GDGCHC	2 cut(s)	114, 438
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	2 cut(s)	627, 744
SsiI	CCGC	3 cut(s)	27, 37, 244
SspMI	CTAG	2 cut(s)	225, 766
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	529, 565, 616
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	136, 505, 544
TaiI	ACGT	2 cut(s)	639, 702
TaqI	TCGA	2 cut(s)	6, 499
TasI	AATT	2 cut(s)	627, 744
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	4 cut(s)	429, 626, 633, 743
Tru9I	TTAA	4 cut(s)	429, 626, 633, 743
TseI	GCWGC	2 cut(s)	29, 254
TspDTI	ATGAA	1 cut(s)	672
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	2 cut(s)	225, 766
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.