Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

2067720 .. 2069414

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAGCCAAAATTGATGCAACTTTGGGATCATACGACCGTATGAAGGAAGTGAAAGAATTCGACGAGTCGAAGATGGGAGTCAAGGGCCTCTCTGATTCTGGCATCATGACCATCCCTCGTATTTTCGTCCACGACCCTCAAACCTTATCCGACCTCAAACCCTCATCCAAAAACACCACAACCCCCATCCCCACCATCGACCTTTCTCACATCAATTCCCCCGCTCACCGCCACAAAATCGTTGACCAAGTGAAATCCGCCGCTAAAACCTTTGGCTTCTTCCATGTCATTAACCACGGTGTGCCTGTCTCCGTTTTGGATGAAACGGTCAACACTGTCAAAGCGTTCCATGAGCAGCCCCATGAAGACAGAGCCAAATACTACAAGAGAAATGAAGGAAAGGGAGTCATGTATGCTACCAATACCGACTTGTACCGCACATCGGCCGCAAGCTGGTGTGACTCACTACAAGTGTGGATGGCCCCGGAGAGGTTGAAGGCGGAGGAGATACCTGAGGTGTGTCGGGAAGGGGTGGTTGGATGGGATTTGCATGCAACTAAGGTGGCGGATGACGTGCTGGAGTTGCTTTCGGAAGGGTTAGGGTTGGAGCGAAGGAGGTTTAAGGAGTTAACGTTTTCAGATCAAAGGTTGCTGGTGGGGCATTGCTATCCTTATTGTCCCGAACCAGATCGGACGGTGGGGATTAAGGGGCATACTGATGGTTCGATTCTGACGGTTCTGTTGCGGAACCATGTTCCTGGGTTGCAAGTTAAGCATGAGAACGAGTGGCTGGATGTGGAACCTGTGCCTGGAGGTTTGATTATTAATGTTGGAGACATGCTACAGATAATCTCCAACGGGGAATATAAAAGTGTGGAACACAGGGTGTTGGCCAACTCTTGGAAAGAAGCTCGGATCTCTATTGTGATATTTTTCAGCCAAACCAAATGGAGAGAAGGTGGCTACTATGGACCTCTGCCGGAGCTTTTGTCACCTGAGAAACCATCAATCTATCGAGACTTCACTGAACAAGAATTACGGGAAAATTTCTACAGCAAAGGACTAGATAGCAAGTCTATGGTTGATAAACTCACAATAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.72

Weight (kDa)

6.18

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 161	1.1e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	219 - 314	5.4e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	903
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
AclI	AACGTT	1 cut(s)	635
AclWI	GGATC	2 cut(s)	37, 926
AcoI	YGGCCR	2 cut(s)	447, 894
AcsI	RAATTY	2 cut(s)	59, 1048
AdeI	CACNNNGTG	2 cut(s)	304, 889
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
AgsI	TTSAA	1 cut(s)	499
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	760, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	456, 914, 988
AluI	AGCT	3 cut(s)	456, 914, 988
Alw26I	GTCTC	3 cut(s)	316, 831, 1014
AlwI	GGATC	2 cut(s)	37, 926
AoxI	GGCC	4 cut(s)	88, 447, 483, 894
ApeKI	GCWGC	2 cut(s)	5, 358
ApoI	RAATTY	2 cut(s)	59, 1048
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	88, 484, 974
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	221, 987
AvaII	GGWCC	1 cut(s)	974
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	896
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	17, 370
BccI	CCATC	8 cut(s)	70, 122, 197, 206, 475, 537, 716, 1015
BciT130I	CCWGG	2 cut(s)	762, 813
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	3 cut(s)	316, 831, 1014
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	2 cut(s)	845, 1054
BisI	GCNGC	4 cut(s)	6, 264, 359, 450
BlsI	GCNGC	4 cut(s)	7, 265, 360, 451
Bme1390I	CCNGG	3 cut(s)	488, 762, 813
Bme18I	GGWCC	1 cut(s)	974
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	88, 484, 974
BmiI	GGNNCC	3 cut(s)	486, 752, 804
BmrFI	CCNGG	3 cut(s)	488, 762, 813
BmsI	GCATC	2 cut(s)	7, 114
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	602, 834
BpuMI	CCSGG	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	298, 486, 761
BsaXI	ACNNNNNCTCC	6 cut(s)	620, 650, 946, 976, 977, 1007
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	762, 813
BseDI	CCNNGG	3 cut(s)	298, 486, 761
BseGI	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BseLI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	507, 990
BseRI	GAGGAG	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	17, 370
Bsh1285I	CGRYCG	2 cut(s)	40, 450
BshFI	GGCC	4 cut(s)	90, 449, 485, 896
BsiEI	CGRYCG	2 cut(s)	40, 450
BsiSI	CCGG	2 cut(s)	488, 983
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
BsmAI	GTCTC	3 cut(s)	316, 831, 1014
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	90, 449, 485, 896
Bsp143I	GATC	4 cut(s)	29, 643, 691, 918
BspACI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
BspANI	GGCC	4 cut(s)	90, 449, 485, 896
BspCNI	CTCAG	2 cut(s)	508, 991
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	486, 752, 804
BspPI	GGATC	2 cut(s)	37, 926
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	298, 486, 761
BssMI	GATC	4 cut(s)	29, 643, 691, 918
Bst2UI	CCWGG	2 cut(s)	762, 813
Bst4CI	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
BstC8I	GCNNGC	2 cut(s)	454, 555
BstDEI	CTNAG	3 cut(s)	516, 561, 999
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BstKTI	GATC	4 cut(s)	32, 646, 694, 921
BstMAI	GTCTC	3 cut(s)	316, 831, 1014
BstMBI	GATC	4 cut(s)	29, 643, 691, 918
BstMCI	CGRYCG	2 cut(s)	40, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
BstNI	CCWGG	2 cut(s)	762, 813
BstNSI	RCATGY	2 cut(s)	557, 844
BstSCI	CCNGG	3 cut(s)	486, 760, 811
BstSFI	CTRYAG	2 cut(s)	845, 1054
BstV1I	GCAGC	2 cut(s)	17, 370
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	918
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	918
BstZI	CGGCCG	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	90, 449, 485, 896
BtgI	CCRYGG	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BtsIMutI	CAGTG	2 cut(s)	336, 1026
Cac8I	GCNNGC	2 cut(s)	454, 555
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	88, 484, 974
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	9 cut(s)	109, 287, 353, 365, 412, 554, 755, 779, 841
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	516, 561, 999
DpnI	GATC	4 cut(s)	31, 645, 693, 920
DpnII	GATC	4 cut(s)	29, 643, 691, 918
DraIII	CACNNNGTG	2 cut(s)	304, 889
EaeI	YGGCCR	2 cut(s)	447, 894
EagI	CGGCCG	1 cut(s)	447
EciI	GGCGGA	3 cut(s)	250, 518, 584
EclXI	CGGCCG	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	974
Eco52I	CGGCCG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	760, 811
FaeI	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	9 cut(s)	108, 286, 352, 364, 411, 553, 754, 778, 840
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	6, 264, 359, 450
FokI	GGATG	8 cut(s)	101, 154, 176, 335, 493, 555, 584, 809
Fsp4HI	GCNGC	4 cut(s)	6, 264, 359, 450
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	4 cut(s)	6, 264, 359, 450
GsuI	CTGGAG	2 cut(s)	602, 834
HaeIII	GGCC	4 cut(s)	90, 449, 485, 896
HapII	CCGG	2 cut(s)	488, 983
Hin1II	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
HincII	GTYRAC	3 cut(s)	247, 334, 633
HindII	GTYRAC	3 cut(s)	247, 334, 633
HinfI	GANTC	6 cut(s)	68, 81, 98, 408, 464, 730
HpaI	GTTAAC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	488, 983
HphI	GGTGA	2 cut(s)	221, 987
Hpy166II	GTNNAC	4 cut(s)	133, 247, 334, 633
Hpy188I	TCNGA	7 cut(s)	97, 154, 595, 643, 696, 735, 918
Hpy188III	TCNNGA	4 cut(s)	109, 527, 683, 1019
Hpy8I	GTNNAC	4 cut(s)	133, 247, 334, 633
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	7 cut(s)	40, 392, 493, 524, 590, 609, 953
HpyCH4III	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
HpyCH4IV	ACGT	2 cut(s)	576, 635
HpyCH4V	TGCA	4 cut(s)	20, 553, 557, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
HpyF3I	CTNAG	3 cut(s)	516, 561, 999
HpySE526I	ACGT	2 cut(s)	576, 635
Hsp92II	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	29, 643, 691, 918
LmnI	GCTCC	2 cut(s)	610, 985
Lsp1109I	GCAGC	2 cut(s)	17, 370
LweI	GCATC	2 cut(s)	7, 114
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	2 cut(s)	576, 635
MaeIII	GTNAC	2 cut(s)	461, 993
MalI	GATC	4 cut(s)	31, 645, 693, 920
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	29, 643, 691, 918
MboII	GAAGA	3 cut(s)	85, 274, 380
MflI	RGATCY	1 cut(s)	918
MlsI	TGGCCA	1 cut(s)	896
MluCI	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
MluNI	TGGCCA	1 cut(s)	896
MlyI	GAGTC	4 cut(s)	77, 90, 417, 458
MmeI	TCCRAC	5 cut(s)	177, 520, 588, 814, 882
Mox20I	TGGCCA	1 cut(s)	896
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	896
MseI	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	896
MspI	CCGG	2 cut(s)	488, 983
MspR9I	CCNGG	3 cut(s)	488, 762, 813
MvaI	CCWGG	2 cut(s)	762, 813
MwoI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	29, 643, 691, 918
NlaIII	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
NlaIV	GGNNCC	3 cut(s)	486, 752, 804
NmuCI	GTSAC	2 cut(s)	461, 993
NspI	RCATGY	2 cut(s)	557, 844
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	98, 730
PflMI	CCANNNNNTGG	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	7, 265, 360, 451
PleI	GAGTC	4 cut(s)	76, 89, 416, 458
PpsI	GAGTC	4 cut(s)	76, 89, 416, 458
PshBI	ATTAAT	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	760, 811
PspGI	CCWGG	2 cut(s)	760, 811
PspN4I	GGNNCC	3 cut(s)	486, 752, 804
PspPI	GGNCC	3 cut(s)	88, 484, 974
PsrI	GAACNNNNNNTAC	2 cut(s)	1023, 1055
PsuI	RGATCY	1 cut(s)	918
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
SatI	GCNGC	4 cut(s)	6, 264, 359, 450
Sau3AI	GATC	4 cut(s)	29, 643, 691, 918
Sau96I	GGNCC	3 cut(s)	88, 484, 974
SchI	GAGTC	4 cut(s)	77, 90, 417, 458
ScrFI	CCNGG	3 cut(s)	488, 762, 813
SfaNI	GCATC	2 cut(s)	7, 114
SfcI	CTRYAG	2 cut(s)	845, 1054
SinI	GGWCC	1 cut(s)	974
SmiMI	CAYNNNNRTG	1 cut(s)	720
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
SsiI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	3 cut(s)	486, 760, 811
TaaI	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
TaiI	ACGT	2 cut(s)	579, 638
TaqI	TCGA	5 cut(s)	63, 71, 201, 728, 1018
TasI	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
TauI	GCSGC	2 cut(s)	266, 452
TfiI	GAWTC	2 cut(s)	98, 730
Tru1I	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
Tru9I	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
TscAI	CASTG	2 cut(s)	343, 1033
TseFI	GTSAC	2 cut(s)	461, 993
TseI	GCWGC	2 cut(s)	5, 358
Tsp45I	GTSAC	2 cut(s)	461, 993
TspDTI	ATGAA	4 cut(s)	59, 339, 381, 411
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	343, 1033
Van91I	CCANNNNNTGG	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	2 cut(s)	59, 1048
XceI	RCATGY	2 cut(s)	557, 844
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.