pycom14g02700

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0006061
Physical Location & Seq
Reverse (-)
2078631 .. 2080203
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGTCGAGGAAGAAGACCAGGGAGCCCAAGGAGGATAATGTTACTCTTGGACCTGTTCTCCGTGACGGAGAACATGCTTTCGGTGTTGCTCATATTTTTGCCTCATTTAATGATACCTTCATTCATGTGACTGACTTGTCCGGTAGGGAGACTCTTGTGCGCATCACCGGTGGTATGAAGGTGAAAGCTGATAGGGATGAATCATCGCCTTATGCAGCTATGCTTGCCGCTCAGGATGTTTCTCAACGCTGCAAGGAGCTTGGCATTACTGCTCTACATATAAAGCTCCGGGCTACTGGAGGGAACAAGACCAAGACTCCTGGTCCAGGCGCCCAATCAGCACTCAGAGCCCTTGCTCGTTCTGGCATGAGAATTGGTCGCATTGAGGATGTGACTCCAATTCCCACTGACAGCACTCGTAGAAAGGGTGGCAGAAGGGGAAGAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.33

Weight (kDa)

10.7

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 28 - 146 3.9e-47 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
Acc16I TGCGCA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 230
AciI CCGC 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 326
AgeI ACCGGT 1 cut(s) 167
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 3 cut(s) 17, 319, 325
AluBI AGCT 4 cut(s) 188, 218, 259, 286
AluI AGCT 4 cut(s) 188, 218, 259, 286
Alw26I GTCTC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 215, 249
AsiGI ACCGGT 1 cut(s) 167
AspLEI GCGC 2 cut(s) 162, 332
AspS9I GGNCC 2 cut(s) 50, 323
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 157, 193
AvaII GGWCC 2 cut(s) 50, 323
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 27, 352
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 227, 236
BciT130I CCWGG 3 cut(s) 19, 321, 327
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 3 cut(s) 216, 228, 250
BlsI GCNGC 3 cut(s) 217, 229, 251
Bme1390I CCNGG 4 cut(s) 19, 290, 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 2 cut(s) 24, 331
BmrFI CCNGG 4 cut(s) 19, 290, 321, 327
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 18, 27
BsaWI WCCGGW 2 cut(s) 140, 167
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 3 cut(s) 19, 321, 327
BseDI CCNNGG 2 cut(s) 18, 27
BseGI GGATG 3 cut(s) 202, 241, 394
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 245, 358
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 227, 236
BshNI GGYRCC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 167
BsiSI CCGG 3 cut(s) 141, 168, 289
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 27, 352
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 244, 357
BspLI GGNNCC 2 cut(s) 24, 331
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 18, 27
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 19, 321, 327
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 231, 344
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 202, 241, 394
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 162, 332
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 3 cut(s) 19, 321, 327
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 17, 288, 319, 325
BstV1I GCAGC 2 cut(s) 227, 236
BstV2I GAAGAC 1 cut(s) 20
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 202, 241, 394
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 2 cut(s) 162, 332
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 50, 323
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 74, 125, 367
CviJI RGCY 7 cut(s) 25, 188, 218, 259, 286, 293, 350
CviKI_1 RGCY 7 cut(s) 25, 188, 218, 259, 286, 293, 350
DdeI CTNAG 2 cut(s) 231, 344
DinI GGCGCC 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 27, 352
Eco47I GGWCC 2 cut(s) 50, 323
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 17, 319, 325
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 27, 352
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 77, 128, 370
FaiI YATR 9 cut(s) 75, 93, 126, 176, 213, 221, 279, 281, 368
FatI CATG 3 cut(s) 73, 124, 366
Fnu4HI GCNGC 3 cut(s) 216, 228, 250
FokI GGATG 3 cut(s) 209, 248, 401
FriOI GRGCYC 2 cut(s) 27, 352
Fsp4HI GCNGC 3 cut(s) 216, 228, 250
FspAI RTGCGCAY 1 cut(s) 161
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 2 cut(s) 161, 331
GluI GCNGC 3 cut(s) 216, 228, 250
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 333
HapII CCGG 3 cut(s) 141, 168, 289
HhaI GCGC 2 cut(s) 162, 332
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 77, 128, 370
Hin6I GCGC 2 cut(s) 160, 330
HinP1I GCGC 2 cut(s) 160, 330
HinfI GANTC 4 cut(s) 151, 200, 316, 394
HpaII CCGG 3 cut(s) 141, 168, 289
HphI GGTGA 2 cut(s) 157, 193
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 127, 172, 429, 438
HpyCH4V TGCA 2 cut(s) 215, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
HpyF3I CTNAG 2 cut(s) 231, 344
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 77, 128, 370
HspAI GCGC 2 cut(s) 160, 330
KasI GGCGCC 1 cut(s) 329
LmnI GCTCC 3 cut(s) 22, 256, 291
Lsp1109I GCAGC 2 cut(s) 227, 236
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 40, 62, 127, 391
MbiI CCGCTC 1 cut(s) 230
MboII GAAGA 3 cut(s) 22, 25, 453
MhlI GDGCHC 2 cut(s) 27, 352
MluCI AATT 2 cut(s) 372, 399
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 3 cut(s) 145, 310, 388
MnlI CCTC 4 cut(s) 25, 112, 293, 379
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 3 cut(s) 141, 168, 289
MspR9I CCNGG 4 cut(s) 19, 290, 321, 327
MvaI CCWGG 3 cut(s) 19, 321, 327
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 1 cut(s) 290
NlaIII CATG 3 cut(s) 77, 128, 370
NlaIV GGNNCC 2 cut(s) 24, 331
NmuCI GTSAC 3 cut(s) 62, 127, 391
NsbI TGCGCA 1 cut(s) 161
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 3 cut(s) 217, 229, 251
PleI GAGTC 3 cut(s) 145, 310, 388
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 3 cut(s) 145, 310, 388
Psp6I CCWGG 3 cut(s) 17, 319, 325
PspGI CCWGG 3 cut(s) 17, 319, 325
PspN4I GGNNCC 2 cut(s) 24, 331
PspPI GGNCC 2 cut(s) 50, 323
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 3 cut(s) 216, 228, 250
Sau96I GGNCC 2 cut(s) 50, 323
SchI GAGTC 3 cut(s) 145, 310, 388
ScrFI CCNGG 4 cut(s) 19, 290, 321, 327
SduI GDGCHC 2 cut(s) 27, 352
SetI ASST 8 cut(s) 55, 119, 183, 190, 220, 261, 288, 449
SfaNI GCATC 1 cut(s) 171
SfoI GGCGCC 1 cut(s) 331
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 2 cut(s) 372, 399
SsiI CCGC 1 cut(s) 228
SspDI GGCGCC 1 cut(s) 329
StyD4I CCNGG 4 cut(s) 17, 288, 319, 325
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 372, 399
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 3 cut(s) 62, 127, 391
TseI GCWGC 2 cut(s) 215, 249
Tsp45I GTSAC 3 cut(s) 62, 127, 391
TspDTI ATGAA 4 cut(s) 109, 113, 191, 213
TspGWI ACGGA 2 cut(s) 50, 81
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.