Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002841

Physical Location & Seq

Genomic Coordinates Reverse (-)

2397748 .. 2400786

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCTTTATATCCACGTGTCAGTCATTTATCCAAAAGCGGGTGTTTGCCGTTTGCCGCCGAAAGCCAAACCGTCCACGATCCACCCACCCGCCCACAGTCCCACTCTCTCTCTCTCTCTCTTTCTCTCTCTTACAGTAAGAGGGATGCTCGGTCTGACTGCCTCTCTGGCCGCCGCAACGCCACCCAACGCCACCGCCACAAATTCTTGTATCATTCCAAACACCCGTCCTCTCCTGCTGTCCTCCGACGCGCAAATACGAACCAATTCCTCATCGTCTTTCGCCTGTTGCTCAGTGAGGAACTTGCACTCAAGTTGCAGAATAATTAAAGCCATGGCGGCGGCTGAGGAGACCCTTACGGTCACTAACCCTCCCTCACCCCTTTCCGGTAATAGGCAGGCTCTGATATCATTGTCAGACAAGAAGGATCTTGCTGTTTTAGGAAATGGGATTCAGGACTTGGGATATAAAATTGTTTCGACTGGAGGAACTGCATCTACCTTAGAAAGTGCTGGCCTGCCTGTCACTAAGGTGGAACAACTTACTAGTTTTGTTCGGTTGCAGCTTGATGGTTGTGTAAAAACTTTACACCCTAACGTACATGGAGGTATCCTTGCTAGAAGAGACCAAAGGCATCACATGGAATCTCTTAGTAAGCATGAAATTGGTACATTTGATGTGGTTGTGGTGAATTTGTACCCCTTTTACGAGAAGGTTACTTCAACAGGAGGAATAGAGTTTGAAGATGGAATTGAGAATATAGACATTGGTGGTCCTGCCATGATAAGAGCAGCCACAAAGAATCACAAAGATGTCTTGGTGGTGGTTGATTCAGAAGACTATCCCGCACTTCTTGAGTTTCTTAAGGGAGACAAGGATGATCGACAATTCCGAAGGAAGCTTGCATGGAAGGCTTTCCAACATGTAGCTTCTTATGATTCTGCAGTTTCAGAATGGCTTTGGAAGCAGACTTCTGAAATAAATTCCCTCAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523

Pfam Domains

Protein Families

AICARFT_IMPCHas MGS

Protein Analysis

333

Amino Acids

35.97

Weight (kDa)

8.67

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35040 AT2G35040
fragaria_vesca	FvH4_1g24580 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800 FvH4_7g04800
malus_domestica	MD12G1033700.v1.1 MD12G1088900.v1.1 MD14G1035300.v1.1
prunus_persica	Prupe.5G007600_v2.0.a1
pyrus_communis	pycom12g03130 pycom14g03100
rosa_chinensis	RchiOBHm_Chr1g0326741 RchiOBHm_Chr2g0124681
rosa_laevigata	RLG00000018812 RLG00000030060
rosa_multiflora	Rmu_co8264225.1_g000001 Rmu_sc0005597.1_g000001 Rmu_sc0006443.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119760 Rroxscaffold_4G00323570 Rroxscaffold_4G00323590 Rroxscaffold_7G00201340
rosa_rugosa	Rorug01G0061600.1 Rorug02G0251800
rosa_samantha	Rh1AG078200 Rh1CG076200 Rh2CG298000 Rh2DG334700 Rh6AG033400
rosa_wichuraiana	Rw1G006250 Rw2G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	9 cut(s)	38, 56, 90, 171, 174, 195, 338, 341, 846
AclWI	GGATC	2 cut(s)	73, 435
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	202, 691, 982
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	3 cut(s)	600, 670, 698
AfiI	CCNNNNNNNGG	3 cut(s)	38, 386, 393
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	2 cut(s)	15, 922
AgsI	TTSAA	2 cut(s)	723, 743
AhlI	ACTAGT	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	565, 901, 929, 995
AluI	AGCT	4 cut(s)	565, 901, 929, 995
Alw26I	GTCTC	3 cut(s)	344, 618, 864
AlwI	GGATC	2 cut(s)	73, 435
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	2 cut(s)	168, 514
ApeKI	GCWGC	2 cut(s)	562, 791
ApoI	RAATTY	3 cut(s)	202, 691, 982
Asp700I	GAANNNNTTC	2 cut(s)	265, 914
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	369, 700
AvaII	GGWCC	1 cut(s)	773
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	843
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	574, 803
BccI	CCATC	2 cut(s)	563, 740
BceAI	ACGGC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	620
BcoDI	GTCTC	3 cut(s)	344, 618, 864
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	2 cut(s)	546, 618
BfmI	CTRYAG	1 cut(s)	942
BfrI	CTTAAG	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	620
BglI	GCCNNNNNGGC	2 cut(s)	167, 338
BisI	GCNGC	7 cut(s)	56, 171, 174, 339, 342, 563, 792
BlsI	GCNGC	7 cut(s)	57, 172, 175, 340, 343, 564, 793
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	773
BmsI	GCATC	3 cut(s)	135, 503, 643
BpiI	GAAGAC	1 cut(s)	843
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	295, 875
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	2 cut(s)	344, 618
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 386, 393
Bse1I	ACTGG	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	150, 883
BseLI	CCNNNNNNNGG	3 cut(s)	38, 386, 393
BseMII	CTCAG	2 cut(s)	306, 336
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	574, 803
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	170, 516
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	38, 386, 393
BsmAI	GTCTC	3 cut(s)	344, 618, 864
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	170, 516
Bso31I	GGTCTC	2 cut(s)	344, 618
Bsp143I	GATC	3 cut(s)	78, 427, 880
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	9 cut(s)	38, 56, 90, 171, 174, 195, 338, 341, 846
BspANI	GGCC	2 cut(s)	170, 516
BspCNI	CTCAG	2 cut(s)	305, 337
BspFNI	CGCG	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	2 cut(s)	73, 435
BspTI	CTTAAG	1 cut(s)	863
BspTNI	GGTCTC	2 cut(s)	344, 618
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	78, 427, 880
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	72, 98, 136, 361
Bst6I	CTCTTC	1 cut(s)	616
BstAFI	CTTAAG	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	4 cut(s)	399, 514, 518, 903
BstDEI	CTNAG	6 cut(s)	292, 345, 502, 528, 650, 989
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	150, 883
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	81, 430, 883
BstMAI	GTCTC	3 cut(s)	344, 618, 864
BstMBI	GATC	3 cut(s)	78, 427, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 338, 911, 964
BstNSI	RCATGY	1 cut(s)	926
BstSFI	CTRYAG	1 cut(s)	942
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	574, 803
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	170, 516
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	150, 883
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	399, 514, 518, 903
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	773
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	3 cut(s)	599, 669, 697
CviAII	CATG	7 cut(s)	334, 602, 640, 659, 781, 906, 923
CviQI	GTAC	3 cut(s)	599, 669, 697
DdeI	CTNAG	6 cut(s)	292, 345, 502, 528, 650, 989
DpnI	GATC	3 cut(s)	80, 429, 882
DpnII	GATC	3 cut(s)	78, 427, 880
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	344, 618
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	773
Eco72I	CACGTG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	7 cut(s)	337, 605, 643, 662, 784, 909, 926
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	7 cut(s)	333, 601, 639, 658, 780, 905, 922
FauI	CCCGC	3 cut(s)	31, 97, 853
Fnu4HI	GCNGC	7 cut(s)	56, 171, 174, 339, 342, 563, 792
FokI	GGATG	2 cut(s)	157, 890
Fsp4HI	GCNGC	7 cut(s)	56, 171, 174, 339, 342, 563, 792
FspBI	CTAG	2 cut(s)	546, 618
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	7 cut(s)	56, 171, 174, 339, 342, 563, 792
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	170, 516
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	7 cut(s)	337, 605, 643, 662, 784, 909, 926
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	451, 644, 802, 830, 938
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	2 cut(s)	369, 700
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	9 cut(s)	156, 247, 405, 418, 835, 893, 952, 976, 992
Hpy188III	TCNNGA	2 cut(s)	455, 854
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	418, 706, 888, 904
HpyCH4III	ACNGT	4 cut(s)	72, 98, 136, 361
HpyCH4IV	ACGT	2 cut(s)	15, 597
HpyCH4V	TGCA	6 cut(s)	307, 318, 494, 562, 905, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 338, 911, 964
HpyF3I	CTNAG	6 cut(s)	292, 345, 502, 528, 650, 989
HpySE526I	ACGT	2 cut(s)	15, 597
Hsp92II	CATG	7 cut(s)	337, 605, 643, 662, 784, 909, 926
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	78, 427, 880
Lsp1109I	GCAGC	2 cut(s)	574, 803
LweI	GCATC	3 cut(s)	135, 503, 643
MaeI	CTAG	2 cut(s)	546, 618
MaeII	ACGT	2 cut(s)	15, 597
MaeIII	GTNAC	3 cut(s)	361, 523, 715
MalI	GATC	3 cut(s)	80, 429, 882
MboI	GATC	3 cut(s)	78, 427, 880
MboII	GAAGA	3 cut(s)	633, 755, 848
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	9 cut(s)	202, 265, 324, 471, 663, 691, 750, 887, 982
MmeI	TCCRAC	2 cut(s)	270, 943
MroXI	GAANNNNTTC	2 cut(s)	265, 914
MseI	TTAA	3 cut(s)	327, 864, 997
MslI	CAYNNNNRTG	2 cut(s)	530, 810
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	167, 338, 911, 964
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	78, 427, 880
NlaIII	CATG	7 cut(s)	337, 605, 643, 662, 784, 909, 926
NmuCI	GTSAC	2 cut(s)	361, 523
NspI	RCATGY	1 cut(s)	926
OliI	CACNNNNGTG	1 cut(s)	530
PciI	ACATGT	1 cut(s)	922
PcsI	WCGNNNNNNNCGW	1 cut(s)	889
PdmI	GAANNNNTTC	2 cut(s)	265, 914
PfeI	GAWTC	5 cut(s)	451, 644, 802, 830, 938
PkrI	GCNGC	7 cut(s)	57, 172, 175, 340, 343, 564, 793
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	1 cut(s)	922
PspCI	CACGTG	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	773
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstI	CTGCAG	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	3 cut(s)	600, 670, 698
RsaNI	GTAC	3 cut(s)	599, 669, 697
RseI	CAYNNNNRTG	2 cut(s)	530, 810
SaqAI	TTAA	3 cut(s)	327, 864, 997
SatI	GCNGC	7 cut(s)	56, 171, 174, 339, 342, 563, 792
Sau3AI	GATC	3 cut(s)	78, 427, 880
Sau96I	GGNCC	1 cut(s)	773
SfaNI	GCATC	3 cut(s)	135, 503, 643
SfcI	CTRYAG	1 cut(s)	942
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	2 cut(s)	530, 810
SmlI	CTYRAG	3 cut(s)	310, 854, 863
SmoI	CTYRAG	3 cut(s)	310, 854, 863
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	9 cut(s)	202, 265, 324, 471, 663, 691, 750, 887, 982
SsiI	CCGC	9 cut(s)	38, 56, 90, 171, 174, 195, 338, 341, 846
SspMI	CTAG	2 cut(s)	546, 618
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	72, 98, 136, 361
TaiI	ACGT	2 cut(s)	18, 600
TaqI	TCGA	2 cut(s)	479, 883
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	9 cut(s)	202, 265, 324, 471, 663, 691, 750, 887, 982
TauI	GCSGC	5 cut(s)	58, 173, 176, 341, 344
TfiI	GAWTC	5 cut(s)	451, 644, 802, 830, 938
Tru1I	TTAA	3 cut(s)	327, 864, 997
Tru9I	TTAA	3 cut(s)	327, 864, 997
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	361, 523
TseI	GCWGC	2 cut(s)	562, 791
Tsp45I	GTSAC	2 cut(s)	361, 523
TspDTI	ATGAA	1 cut(s)	675
TspRI	CASTG	1 cut(s)	300
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	3 cut(s)	202, 691, 982
XceI	RCATGY	1 cut(s)	926
XmnI	GAANNNNTTC	2 cut(s)	265, 914
XspI	CTAG	2 cut(s)	546, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.