Rroxscaffold_4G00323590

AICARFT IMPCHase bienzyme family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002841
Physical Location & Seq
Reverse (-)
54455391 .. 54457834
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323590.1

Sequence Viewer

Length: 237 bp
ATGTCATATAATAACTATTTAGATGCCGATGCGGCTTGGAATTGTGTGTCAGAGTTCAGAAGTCCTACTTGTGTTGTTGTAAAACGTACAAATCCTTGTGGTGTAGCATCACGTGATGATATACTTGACGCATACAGGCTTGCTGTCAAAGCAGATCCAGTGAGTGCATTTGGTGGCATTGTAGCTTTCAACATAGAGGTTGATGAGGTGAGTTTGAGATCTCGGGGCTTGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
AICARFT_IMPCHas MGS

Protein Analysis

78

Amino Acids

8.5

Weight (kDa)

4.81

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AICARFT_IMPCHas PF01808 1 - 69 3.9e-30 AICARFT/IMPCHase bienzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 149
AcvI CACGTG 1 cut(s) 113
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 218
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 222
BmsI GCATC 3 cut(s) 13, 19, 116
BsaAI YACGTR 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 2 cut(s) 154, 218
BspACI CCGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 158
BssMI GATC 2 cut(s) 154, 218
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 141
BstKTI GATC 2 cut(s) 157, 221
BstMBI GATC 2 cut(s) 154, 218
BstMWI GCNNNNNNNGC 2 cut(s) 32, 149
BstX2I RGATCY 2 cut(s) 154, 218
BstYI RGATCY 2 cut(s) 154, 218
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 141
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 87
CviJI RGCY 4 cut(s) 35, 139, 185, 228
CviKI_1 RGCY 4 cut(s) 35, 139, 185, 228
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 156, 220
DpnII GATC 2 cut(s) 154, 218
Eco72I CACGTG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 222
FaiI YATR 5 cut(s) 7, 9, 122, 133, 194
FalI AAGNNNNNCTT 2 cut(s) 52, 84
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HgaI GACGC 1 cut(s) 137
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 52, 59
HpyCH4IV ACGT 3 cut(s) 85, 112, 233
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 149
HpySE526I ACGT 3 cut(s) 85, 112, 233
Kzo9I GATC 2 cut(s) 154, 218
LpnPI CCDG 2 cut(s) 121, 171
LweI GCATC 3 cut(s) 13, 19, 116
MaeII ACGT 3 cut(s) 85, 112, 233
MalI GATC 2 cut(s) 156, 220
MboI GATC 2 cut(s) 154, 218
MflI RGATCY 2 cut(s) 154, 218
MluCI AATT 1 cut(s) 40
MnlI CCTC 2 cut(s) 190, 199
MwoI GCNNNNNNNGC 2 cut(s) 32, 149
NdeII GATC 2 cut(s) 154, 218
PkrI GCNGC 1 cut(s) 34
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 113
PspCI CACGTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 154, 218
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 154, 218
SetI ASST 6 cut(s) 88, 115, 187, 201, 210, 236
SfaNI GCATC 3 cut(s) 13, 19, 116
SgeI CNNG 9 cut(s) 48, 81, 108, 123, 125, 137, 148, 152, 170
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 32
TaiI ACGT 3 cut(s) 88, 115, 236
TasI AATT 1 cut(s) 40
TauI GCSGC 1 cut(s) 35
TscAI CASTG 1 cut(s) 165
TspRI CASTG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.