Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

10041136 .. 10043563

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTATTCAGCCCAGTTCCGCTTCAATCGGATCAGCTGGTGCGGCCACCGAGTCCTGACCAGGACCCCCAGCAAGTTGTAACAACTCCAACAAAGGGAATTCTACAAAATTTGCAGGGGATTCTTAACCTCACACCTCTCTTCCGTCCTAATCATGTAAGCTTATTACCAGAAGTTGATCTTAAAGGAGTGAGCTGGCACCAACATAAACTTGTTGTAGCGCTTATATCTGGCCCAAATCAAGTTATAGTTTGGGATTTCGAAGGGAAGGAGCCATGCATTTTGGCCAATGAGTCCCAAAGAGAGGTCAAAGTACTTGAATGGAGGCCAAACGGTGGGAGACAACTTGCCGTAGCATGCAAGCACGCTATAAGTTGTAAAGCTGAATTTCTCTCACTGCATGTGCTTGATTTCAGAGGTGGAATTTGCATTTGGGCTGCTTCTTTCCCAGGAATTGCAGCATCTATCAGATCTGGTTCTTCTTCCTTCCTGGGAACTCTCTCTAGAGGTTCTGGAATTCGATGTACTTTGGTGGATTTTCTTCGAAGTCATAACGAGGAACAGATTAGTGCATTGTCATGGAGTCCTGATGGAAGATATCCAAACAATCTCTATTCTGGTTTTCCATTATGGTTAAACTTAAGAGACTCTACATTACATGAATATGGAGGCTTTCTTACAATTTATCACTGTCATCTATATGCAAACTTTATAAAAAATTTTGAGAAAACTTTATGTTTCTGTTTTACTTTTGCATTCACTTTCTCTATAGTATGTTGTGGAATCAATTTCATTTTTTATACATGGATATTCTCAAGCAGGAAAAAATGCCCCATTTTATTTGTATTGAAAAAGAGCCTTTATTTTCAGATTAATTTCACACTTACTTTTGTTCAGTCGTGCTATATGGGATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

307

Amino Acids

34.55

Weight (kDa)

8.7

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Aladin	PF25460	60 - 124	1.8e-08	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	20, 43
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	2 cut(s)	44, 285
AcsI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
AfaI	GTAC	2 cut(s)	315, 526
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
AflII	CTTAAG	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	26, 320, 850
AjnI	CCWGG	3 cut(s)	60, 448, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	4 cut(s)	37, 162, 195, 383
AluI	AGCT	4 cut(s)	37, 162, 195, 383
Alw26I	GTCTC	2 cut(s)	334, 639
AlwI	GGATC	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	4 cut(s)	44, 232, 285, 326
ApeKI	GCWGC	2 cut(s)	437, 458
ApoI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
AseI	ATTAAT	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	64, 233
AsuII	TTCGAA	2 cut(s)	261, 544
AvaII	GGWCC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	424, 470
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	3 cut(s)	62, 450, 491
BcoDI	GTCTC	2 cut(s)	334, 639
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	224
BfrI	CTTAAG	1 cut(s)	640
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	3 cut(s)	44, 438, 459
BlsI	GCNGC	3 cut(s)	45, 439, 460
BmcAI	AGTACT	1 cut(s)	315
Bme1390I	CCNGG	3 cut(s)	62, 450, 491
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 233
BmiI	GGNNCC	3 cut(s)	66, 200, 273
BmrFI	CCNGG	3 cut(s)	62, 450, 491
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	8
Bpu14I	TTCGAA	2 cut(s)	261, 544
BpuEI	CTTGAG	1 cut(s)	799
BsaJI	CCNNGG	2 cut(s)	448, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 304, 335
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	62, 450, 491
BseDI	CCNNGG	2 cut(s)	448, 490
BseLI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	424, 470
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	4 cut(s)	46, 234, 287, 328
BshNI	GGYRCC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
BsmAI	GTCTC	2 cut(s)	334, 639
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	4 cut(s)	46, 234, 287, 328
Bsp119I	TTCGAA	2 cut(s)	261, 544
Bsp143I	GATC	3 cut(s)	31, 178, 470
BspACI	CCGC	2 cut(s)	20, 43
BspANI	GGCC	4 cut(s)	46, 234, 287, 328
BspLI	GGNNCC	3 cut(s)	66, 200, 273
BspPI	GGATC	1 cut(s)	39
BspT104I	TTCGAA	2 cut(s)	261, 544
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	448, 490
BssMI	GATC	3 cut(s)	31, 178, 470
Bst2UI	CCWGG	3 cut(s)	62, 450, 491
Bst4CI	ACNGT	2 cut(s)	335, 692
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	640
BstBI	TTCGAA	2 cut(s)	261, 544
BstC8I	GCNNGC	4 cut(s)	197, 358, 362, 366
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	34, 181, 473
BstMAI	GTCTC	2 cut(s)	334, 639
BstMBI	GATC	3 cut(s)	31, 178, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	3 cut(s)	62, 450, 491
BstNSI	RCATGY	2 cut(s)	360, 404
BstSCI	CCNGG	3 cut(s)	60, 448, 489
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	424, 470
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	4 cut(s)	46, 234, 287, 328
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	395, 688
Cac8I	GCNNGC	4 cut(s)	197, 358, 362, 366
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	64, 233
Csp6I	GTAC	2 cut(s)	314, 525
CviAII	CATG	7 cut(s)	155, 276, 357, 401, 579, 659, 804
CviQI	GTAC	2 cut(s)	314, 525
DpnI	GATC	3 cut(s)	33, 180, 472
DpnII	GATC	3 cut(s)	31, 178, 470
EaeI	YGGCCR	2 cut(s)	44, 285
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	64
Eco47III	AGCGCT	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	99, 516
EcoRII	CCWGG	3 cut(s)	60, 448, 489
EcoRV	GATATC	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	281
FaeI	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	7 cut(s)	154, 275, 356, 400, 578, 658, 803
Fnu4HI	GCNGC	3 cut(s)	44, 438, 459
Fsp4HI	GCNGC	3 cut(s)	44, 438, 459
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	44, 438, 459
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	46, 234, 287, 328
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	6 cut(s)	52, 121, 293, 583, 647, 783
Hpy188I	TCNGA	4 cut(s)	31, 416, 470, 870
Hpy188III	TCNNGA	4 cut(s)	56, 504, 513, 587
HpyAV	CCTTC	3 cut(s)	257, 262, 496
HpyCH4III	ACNGT	2 cut(s)	335, 692
HpyCH4V	TGCA	9 cut(s)	115, 279, 360, 400, 429, 458, 572, 704, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	31, 178, 470
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	424, 470
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	33, 180, 472
MboI	GATC	3 cut(s)	31, 178, 470
MboII	GAAGA	5 cut(s)	133, 471, 474, 533, 606
MflI	RGATCY	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	4 cut(s)	61, 302, 592, 641
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	140, 147, 298, 318, 410, 500, 550, 662
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	5 cut(s)	126, 183, 635, 641, 873
MslI	CAYNNNNRTG	3 cut(s)	577, 663, 699
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	37
MspCI	CTTAAG	1 cut(s)	640
MspR9I	CCNGG	3 cut(s)	62, 450, 491
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	3 cut(s)	62, 450, 491
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	3 cut(s)	31, 178, 470
NlaIII	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
NlaIV	GGNNCC	3 cut(s)	66, 200, 273
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	2 cut(s)	360, 404
NspV	TTCGAA	2 cut(s)	261, 544
PaeI	GCATGC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	755
PfeI	GAWTC	2 cut(s)	121, 783
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	45, 439, 460
PleI	GAGTC	4 cut(s)	60, 301, 591, 641
PpsI	GAGTC	4 cut(s)	60, 301, 591, 641
PpuMI	RGGWCCY	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	873
PsiI	TTATAA	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	60, 448, 489
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	3 cut(s)	60, 448, 489
PspN4I	GGNNCC	3 cut(s)	66, 200, 273
PspPI	GGNCC	2 cut(s)	64, 233
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	315, 526
RsaNI	GTAC	2 cut(s)	314, 525
RseI	CAYNNNNRTG	3 cut(s)	577, 663, 699
SaqAI	TTAA	5 cut(s)	126, 183, 635, 641, 873
SatI	GCNGC	3 cut(s)	44, 438, 459
Sau3AI	GATC	3 cut(s)	31, 178, 470
Sau96I	GGNCC	2 cut(s)	64, 233
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	4 cut(s)	61, 302, 592, 641
ScrFI	CCNGG	3 cut(s)	62, 450, 491
SetI	ASST	9 cut(s)	39, 132, 139, 164, 197, 309, 385, 421, 511
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	2 cut(s)	261, 544
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	3 cut(s)	577, 663, 699
SmlI	CTYRAG	2 cut(s)	640, 814
SmoI	CTYRAG	2 cut(s)	640, 814
SphI	GCATGC	1 cut(s)	360
SsiI	CCGC	2 cut(s)	20, 43
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	60, 448, 489
TaaI	ACNGT	2 cut(s)	335, 692
TaqI	TCGA	3 cut(s)	261, 520, 544
TatI	WGTACW	2 cut(s)	313, 524
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	121, 783
Tru1I	TTAA	5 cut(s)	126, 183, 635, 641, 873
Tru9I	TTAA	5 cut(s)	126, 183, 635, 641, 873
TscAI	CASTG	2 cut(s)	402, 695
TseI	GCWGC	2 cut(s)	437, 458
TspDTI	ATGAA	2 cut(s)	675, 781
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	402, 695
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	873
XapI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	360, 404
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.