Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Forward (+)

4961499 .. 4964686

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTCGGGTAGGAGGAGAATGGGGATTTAAAGGTAGAGGGATTTGGGGTTTTTCGTACAAGAAGACCACTCTCCTCGTTTGCTCCATTAACATCGTTGTTGCTCTCTATGTTCTTCGCTCTCTCTACGGTTCTCTCTACATCTACTCCGATAGAGATACACGCCCCACGTTTGAGTACACTCCGGATCAGATTAGGAAGATGGAGGAATCAGTTCGGATTCGAAAAGCAGCTGAACCGGTTGAGCTAATTAGATTGGTAAAGGCACTGAAGAAGGAGCTTTACAGAGAGGTAGCGGTTGAATTGCCGCAGCCTTTGAAACTGAAGATGACTAATGAGATAATTGATAGGTTGAAAACCTTGAGGCCCAAAGCAAATATTACTGAGCAGAGAGAAGTAGTTGAAAGATTGTGCAAGGAAAAACTAAAAGAAGCTAAGCAGTTGGCAATTGAGACCGAGGCTTCAAATTCAACAGTCCTTCATGAGGAAGCAGAAATGCTAGTAAAAGCTTTGGAATCTGATTCCACTTGGCTGTTGGAAGATTTGGGCCTTTGGATTCCTCCTGAAATTCGTAACACGGAACATCATGATAAACCTGAGGGTGAAGAGGAGTTAGACGATCAAATTTTGCCCGGCAGGCCGCTTCCTCCTGAATGCCATGCAGAAGTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGGCTTAACCACCACAAAGATAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGATCAAGCTAAACGTGCTAAGCCTAATGAAAAGAGATGTAATATATGGGTTTATTGCCCGTCGGAAACTGGTTGCCATTCTCCAGATATCTATGAGCATAAACTTGGAGAGTGCTGGCTTAAATACGCAGAAACGCCTAAACTTAATTTCAAGGACAAGTATCCTGAATCATATAGAAACCGCCATCCATCAGCACCACTCGTTGTTCCTTGGGCCTCTGGCATTGTTGGCGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

331

Amino Acids

37.89

Weight (kDa)

6.4

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	296, 308, 641, 934
AclWI	GGATC	2 cut(s)	195, 762
AcsI	RAATTY	3 cut(s)	466, 567, 624
AcuI	CTGAAG	2 cut(s)	290, 344
AfaI	GTAC	2 cut(s)	59, 179
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	7 cut(s)	302, 319, 355, 404, 465, 471, 904
AluBI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 731, 761
AluI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 731, 761
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	195, 762
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	4 cut(s)	365, 547, 638, 966
ApeKI	GCWGC	4 cut(s)	230, 310, 689, 728
ApoI	RAATTY	3 cut(s)	466, 567, 624
AsiGI	ACCGGT	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	3 cut(s)	366, 547, 966
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	614
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	597
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	242, 322, 676, 740
BccI	CCATC	5 cut(s)	196, 677, 693, 945, 949
BciVI	GTATCC	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	924
BglI	GCCNNNNNGGC	1 cut(s)	637
BisI	GCNGC	6 cut(s)	231, 308, 311, 641, 690, 729
BlpI	GCTNAGC	2 cut(s)	435, 771
BlsI	GCNGC	6 cut(s)	232, 309, 312, 642, 691, 730
Bme1390I	CCNGG	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	366, 547, 966
BmrFI	CCNGG	1 cut(s)	633
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	819
Bpu1102I	GCTNAGC	2 cut(s)	435, 771
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	456, 962
BsaWI	WCCGGW	2 cut(s)	184, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	826
Bse21I	CCTNAGG	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	456, 962
BseGI	GGATG	1 cut(s)	937
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	375, 588
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	3 cut(s)	30, 65, 623
BseXI	GCAGC	4 cut(s)	242, 322, 676, 740
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	4 cut(s)	367, 549, 640, 968
BshTI	ACCGGT	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	3 cut(s)	185, 239, 633
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	4 cut(s)	367, 549, 640, 968
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	187, 619, 754
Bsp1720I	GCTNAGC	2 cut(s)	435, 771
BspACI	CCGC	4 cut(s)	296, 308, 641, 934
BspANI	GGCC	4 cut(s)	367, 549, 640, 968
BspCNI	CTCAG	2 cut(s)	376, 589
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	481, 586
BspPI	GGATC	2 cut(s)	195, 762
BspT104I	TTCGAA	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	456, 962
BssMI	GATC	3 cut(s)	187, 619, 754
BssT1I	CCWWGG	1 cut(s)	962
Bst4CI	ACNGT	3 cut(s)	131, 475, 737
Bst6I	CTCTTC	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	638, 748, 869
BstDEI	CTNAG	4 cut(s)	384, 435, 597, 771
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	937
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	3 cut(s)	190, 622, 757
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	187, 619, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	637, 767, 981
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	631
BstV1I	GCAGC	4 cut(s)	242, 322, 676, 740
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	924
BsuRI	GGCC	4 cut(s)	367, 549, 640, 968
BtsCI	GGATG	1 cut(s)	937
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	638, 748, 869
CciI	TCATGA	2 cut(s)	481, 586
CfoI	GCGC	1 cut(s)	986
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	366, 547, 966
Csp6I	GTAC	2 cut(s)	58, 178
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	3 cut(s)	482, 587, 659
CviQI	GTAC	2 cut(s)	58, 178
DdeI	CTNAG	4 cut(s)	384, 435, 597, 771
DpnI	GATC	3 cut(s)	189, 621, 756
DpnII	GATC	3 cut(s)	187, 619, 754
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	290, 344
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	962
FaeI	CATG	3 cut(s)	485, 590, 662
FatI	CATG	3 cut(s)	481, 586, 658
Fnu4HI	GCNGC	6 cut(s)	231, 308, 311, 641, 690, 729
FokI	GGATG	1 cut(s)	924
Fsp4HI	GCNGC	6 cut(s)	231, 308, 311, 641, 690, 729
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	6 cut(s)	231, 308, 311, 641, 690, 729
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	4 cut(s)	367, 549, 640, 968
HapII	CCGG	3 cut(s)	185, 239, 633
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	3 cut(s)	485, 590, 662
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	6 cut(s)	209, 220, 515, 521, 556, 920
HpaII	CCGG	3 cut(s)	185, 239, 633
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	5 cut(s)	151, 192, 219, 520, 817
Hpy188III	TCNNGA	7 cut(s)	185, 482, 563, 587, 650, 836, 917
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	817
HpyAV	CCTTC	2 cut(s)	268, 488
HpyCH4III	ACNGT	3 cut(s)	131, 475, 737
HpyCH4IV	ACGT	2 cut(s)	170, 766
HpyCH4V	TGCA	3 cut(s)	414, 662, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	637, 767, 981
HpyF3I	CTNAG	4 cut(s)	384, 435, 597, 771
HpySE526I	ACGT	2 cut(s)	170, 766
Hsp92II	CATG	3 cut(s)	485, 590, 662
HspAI	GCGC	1 cut(s)	984
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	187, 619, 754
LmnI	GCTCC	2 cut(s)	89, 277
Lsp1109I	GCAGC	4 cut(s)	242, 322, 676, 740
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	170, 766
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	189, 621, 756
MboI	GATC	3 cut(s)	187, 619, 754
MboII	GAAGA	7 cut(s)	76, 107, 211, 283, 337, 551, 617
MfeI	CAATTG	1 cut(s)	447
MluCI	AATT	8 cut(s)	249, 302, 342, 447, 466, 567, 624, 898
MmeI	TCCRAC	2 cut(s)	516, 795
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	5 cut(s)	30, 90, 708, 873, 897
MspA1I	CMGCKG	2 cut(s)	233, 731
MspI	CCGG	3 cut(s)	185, 239, 633
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	659
MwoI	GCNNNNNNNGC	3 cut(s)	637, 767, 981
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	187, 619, 754
NlaIII	CATG	3 cut(s)	485, 590, 662
NspV	TTCGAA	1 cut(s)	223
PagI	TCATGA	2 cut(s)	481, 586
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	6 cut(s)	209, 220, 515, 521, 556, 920
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	232, 309, 312, 642, 691, 730
PshAI	GACNNNNGTC	1 cut(s)	738
PspPI	GGNCC	3 cut(s)	366, 547, 966
PvuII	CAGCTG	2 cut(s)	233, 731
RsaI	GTAC	2 cut(s)	59, 179
RsaNI	GTAC	2 cut(s)	58, 178
SaqAI	TTAA	5 cut(s)	30, 90, 708, 873, 897
SatI	GCNGC	6 cut(s)	231, 308, 311, 641, 690, 729
Sau3AI	GATC	3 cut(s)	187, 619, 754
Sau96I	GGNCC	3 cut(s)	366, 547, 966
ScrFI	CCNGG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	8 cut(s)	249, 302, 342, 447, 466, 567, 624, 898
SsiI	CCGC	4 cut(s)	296, 308, 641, 934
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	3 cut(s)	131, 475, 737
TaiI	ACGT	2 cut(s)	173, 769
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	8 cut(s)	249, 302, 342, 447, 466, 567, 624, 898
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	310, 643
TfiI	GAWTC	6 cut(s)	209, 220, 515, 521, 556, 920
Tru1I	TTAA	5 cut(s)	30, 90, 708, 873, 897
Tru9I	TTAA	5 cut(s)	30, 90, 708, 873, 897
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	4 cut(s)	230, 310, 689, 728
TspDTI	ATGAA	3 cut(s)	470, 659, 795
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	466, 567, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.