pycom15g10450

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
6915633 .. 6918828
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1470 bp
ATGAATAAGGAAAATGAAAATGCTGCCAAAGTTGAAGAACCTAATGTCCGAATCACAAGAGCACGGGCTAAAGCATTTGGCGCATCCGGGGAGGAACTCTCCTCCTCGATACTTTTCACTAAAGAAAATCAGAAGCGTGGTCTTCGAGCGAATTCCAAAAGAGCAGCATCAGATGAGAACAAAGCATCTGCAATTGCTACTGTTGGCTTGCAGCATAAAAGAAGGGCAGTGCTTAAAGATGTAGGAAACATCGCCTGTGAGGATTCAAATGTTAACTGCACTAATGCATCTCAGATTCAGACTAACAAGCAGGCTAAAAGAGGACTTGGAAAGAATGTTAAGGTGGCCTCAAATATCTCTGAAGCAATTCCAATGGTTCAAGACGACACAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCAGAACCCTTAGAACCCACTCTGCCAAAAGCGCCAGTACCCCAGGGTATATGTCGTACCTTGGGACAGCATGGAGGAGCAGATTTGATGCCTACAATACAGGCTCCTTCAGAATCGGCTGAACTTTGTAACCCCAAAAAGAAAGAAGGAAATATGGCCTTGGAGATAGTGGGGTCCTCAAATGACCCAGACATTGTGAATATTGACTCAAACTTAAAGGATCCTCTGGCGTGCAGCCTGTACGCCCCTGATATTTACAGTAATATATGCCTTGCAGAGGTAGCGCGAAGACCATCAACTGATTATATGGAAAGATTGCAGCGAGATATTACTCCCAGCATGCGAGGAATTTTGGTTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCAGACACACTTTACCTTACAGTAAATCTCATTGATCGGTTTCTCTCTCACAATTATGTTGAAAAGCAAAAACTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCGCGAGTGGAAGAATTTTGCTTCATCACTGACAATACTTACTCAAGAGAGGAGGTATTAAAAATGGAGATTCAAGTTCTAAATTTCTCGCACTTCCAGTTATCTGTTCCCACCACAAAAACATTTCTTAGGAGATTCATTCATGCAGCTCAAGCTTCTTATAAGGTTCCTTGTCTTGAACTGGAGTTATTGGCAAATTATTTAGCAGAGTTGACTCTTGTTGAATACAGCTTCCTGAAGTTCCTACCTTCCCTCATAGCCGCCTCTGCTGTTTTCCTTGCCAGATGGACGCTCAATCAGTCAGACCATCCATGGAACCCTACTTTAGAGCACTACACCTCGTACAAAACATCACACCTCAAAACTACAGTACTTGCACTGGAAGATTTGCAATTGAACACCACCGGTTGTCCTCTAAACTCTATTCGCGAGAAGTATAAACATCAGAAGTTCAAGTCTGTGGCTACATTGACCTCCAAACAACGGGTGGTTCACTCTTTCGAAGATCAATAA

Protein Analysis

490

Amino Acids

54.7

Weight (kDa)

7.53

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 227 - 353 8.8e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 356 - 478 1.1e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AccII CGCG 3 cut(s) 715, 961, 1386
AciI CCGC 2 cut(s) 959, 1218
AclWI GGATC 2 cut(s) 644, 657
AcsI RAATTY 5 cut(s) 151, 777, 948, 971, 1039
AcuI CTGAAG 4 cut(s) 381, 522, 828, 1214
AfaI GTAC 5 cut(s) 468, 487, 671, 1301, 1329
AfiI CCNNNNNNNGG 3 cut(s) 423, 706, 1440
AgeI ACCGGT 1 cut(s) 1361
AgsI TTSAA 9 cut(s) 35, 267, 380, 887, 1031, 1136, 1181, 1354, 1411
AjnI CCWGG 1 cut(s) 471
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AluBI AGCT 6 cut(s) 404, 820, 904, 1106, 1112, 1188
AluI AGCT 6 cut(s) 404, 820, 904, 1106, 1112, 1188
Alw21I GWGCWC 3 cut(s) 64, 958, 1290
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 2 cut(s) 644, 657
AoxI GGCC 2 cut(s) 345, 585
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 7 cut(s) 23, 164, 211, 663, 748, 904, 1103
ApoI RAATTY 5 cut(s) 151, 777, 948, 971, 1039
AsiGI ACCGGT 1 cut(s) 1361
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 3 cut(s) 83, 463, 715
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 1458
AvaII GGWCC 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 958
BamHI GGATCC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 134, 724
Bbv12I GWGCWC 3 cut(s) 64, 958, 1290
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 7 cut(s) 10, 176, 223, 675, 760, 891, 1115
BccI CCATC 3 cut(s) 730, 1236, 1272
BciT130I CCWGG 1 cut(s) 473
BcnI CCSGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 1 cut(s) 1323
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 8 cut(s) 24, 165, 212, 664, 749, 905, 1104, 1218
BlsI GCNGC 8 cut(s) 25, 166, 213, 665, 750, 906, 1105, 1219
BmcAI AGTACT 1 cut(s) 1329
Bme1390I CCNGG 2 cut(s) 88, 473
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 6 cut(s) 534, 604, 651, 825, 1125, 1274
BmrFI CCNGG 2 cut(s) 88, 473
BmsI GCATC 5 cut(s) 92, 176, 194, 296, 507
BpiI GAAGAC 2 cut(s) 134, 724
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 2 cut(s) 884, 1160
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 1458
BpuEI CTTGAG 2 cut(s) 985, 1092
BpuMI CCSGG 1 cut(s) 88
BsaJI CCNNGG 6 cut(s) 87, 471, 472, 489, 588, 1268
BsaWI WCCGGW 1 cut(s) 1361
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 706, 1440
Bse118I RCCGGY 1 cut(s) 1361
Bse1I ACTGG 4 cut(s) 464, 1054, 1143, 1341
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 6 cut(s) 87, 471, 472, 489, 588, 1268
BseGI GGATG 2 cut(s) 83, 1264
BseLI CCNNNNNNNGG 3 cut(s) 423, 706, 1440
BseMII CTCAG 2 cut(s) 305, 396
BseNI ACTGG 4 cut(s) 464, 1054, 1143, 1341
BseRI GAGGAG 4 cut(s) 91, 94, 519, 1022
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 7 cut(s) 10, 176, 223, 675, 760, 891, 1115
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 2 cut(s) 262, 682
Bsh1236I CGCG 3 cut(s) 715, 961, 1386
BshFI GGCC 2 cut(s) 347, 587
BshTI ACCGGT 1 cut(s) 1361
BsiHKAI GWGCWC 3 cut(s) 64, 958, 1290
BsiSI CCGG 2 cut(s) 87, 1362
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 423, 706, 1440
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 2 cut(s) 347, 587
Bsp119I TTCGAA 1 cut(s) 1458
Bsp1286I GDGCHC 3 cut(s) 64, 958, 1290
Bsp143I GATC 3 cut(s) 649, 859, 1462
Bsp19I CCATGG 1 cut(s) 1268
Bsp68I TCGCGA 1 cut(s) 1386
BspACI CCGC 2 cut(s) 959, 1218
BspANI GGCC 2 cut(s) 347, 587
BspCNI CTCAG 2 cut(s) 304, 397
BspFNI CGCG 3 cut(s) 715, 961, 1386
BspLI GGNNCC 6 cut(s) 534, 604, 651, 825, 1125, 1274
BspPI GGATC 2 cut(s) 644, 657
BspT104I TTCGAA 1 cut(s) 1458
BsrFI RCCGGY 1 cut(s) 1361
BsrI ACTGG 4 cut(s) 464, 1054, 1143, 1341
BssAI RCCGGY 1 cut(s) 1361
BssECI CCNNGG 6 cut(s) 87, 471, 472, 489, 588, 1268
BssMI GATC 3 cut(s) 649, 859, 1462
BssT1I CCWWGG 3 cut(s) 489, 588, 1268
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 4 cut(s) 202, 689, 847, 1327
BstBI TTCGAA 1 cut(s) 1458
BstC8I GCNNGC 4 cut(s) 209, 312, 661, 770
BstDEI CTNAG 4 cut(s) 291, 405, 439, 1085
BstDSI CCRYGG 1 cut(s) 1268
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 2 cut(s) 83, 1264
BstFNI CGCG 3 cut(s) 715, 961, 1386
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 3 cut(s) 83, 463, 715
BstKTI GATC 3 cut(s) 652, 862, 1465
BstMBI GATC 3 cut(s) 649, 859, 1462
BstMWI GCNNNNNNNGC 6 cut(s) 80, 401, 460, 710, 1109, 1223
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 772, 925
BstSCI CCNGG 2 cut(s) 86, 471
BstSFI CTRYAG 1 cut(s) 1323
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 3 cut(s) 715, 961, 1386
BstV1I GCAGC 7 cut(s) 10, 176, 223, 675, 760, 891, 1115
BstV2I GAAGAC 2 cut(s) 134, 724
BstX2I RGATCY 1 cut(s) 649
BstXI CCANNNNNNTGG 1 cut(s) 908
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 2 cut(s) 347, 587
BtgI CCRYGG 1 cut(s) 1268
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 2 cut(s) 83, 1264
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 234, 984, 1334
BtuMI TCGCGA 1 cut(s) 1386
Cac8I GCNNGC 4 cut(s) 209, 312, 661, 770
CfoI GCGC 3 cut(s) 83, 463, 715
Cfr10I RCCGGY 1 cut(s) 1361
Cfr13I GGNCC 1 cut(s) 603
CseI GACGC 1 cut(s) 1255
Csp6I GTAC 5 cut(s) 467, 486, 670, 1300, 1328
CspAI ACCGGT 1 cut(s) 1361
CviAII CATG 5 cut(s) 500, 769, 922, 1100, 1269
CviQI GTAC 5 cut(s) 467, 486, 670, 1300, 1328
DdeI CTNAG 4 cut(s) 291, 405, 439, 1085
DpnI GATC 3 cut(s) 651, 861, 1464
DpnII GATC 3 cut(s) 649, 859, 1462
Eco130I CCWWGG 3 cut(s) 489, 588, 1268
Eco47I GGWCC 1 cut(s) 603
Eco57I CTGAAG 4 cut(s) 381, 522, 828, 1214
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoO109I RGGNCCY 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 3 cut(s) 489, 588, 1268
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 3 cut(s) 489, 588, 1268
FaeI CATG 5 cut(s) 503, 772, 925, 1103, 1272
FaqI GGGAC 1 cut(s) 507
FatI CATG 5 cut(s) 499, 768, 921, 1099, 1268
Fnu4HI GCNGC 8 cut(s) 24, 165, 212, 664, 749, 905, 1104, 1218
FokI GGATG 2 cut(s) 70, 1251
Fsp4HI GCNGC 8 cut(s) 24, 165, 212, 664, 749, 905, 1104, 1218
FspBI CTAG 1 cut(s) 794
GlaI GCGC 3 cut(s) 82, 462, 714
GluI GCNGC 8 cut(s) 24, 165, 212, 664, 749, 905, 1104, 1218
GsaI CCCAGC 1 cut(s) 768
GsuI CTGGAG 2 cut(s) 884, 1160
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 347, 587
HapII CCGG 2 cut(s) 87, 1362
HgaI GACGC 1 cut(s) 1255
HhaI GCGC 3 cut(s) 83, 463, 715
Hin1II CATG 5 cut(s) 503, 772, 925, 1103, 1272
Hin6I GCGC 3 cut(s) 81, 461, 713
HinP1I GCGC 3 cut(s) 81, 461, 713
HincII GTYRAC 2 cut(s) 274, 1170
HindII GTYRAC 2 cut(s) 274, 1170
HindIII AAGCTT 1 cut(s) 1110
HinfI GANTC 9 cut(s) 51, 263, 295, 542, 635, 912, 1027, 1092, 1171
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 2 cut(s) 87, 1362
Hpy166II GTNNAC 4 cut(s) 274, 956, 1170, 1450
Hpy188III TCNNGA 6 cut(s) 380, 827, 1002, 1133, 1192, 1385
Hpy8I GTNNAC 4 cut(s) 274, 956, 1170, 1450
HpyAV CCTTC 4 cut(s) 216, 546, 569, 1215
HpyCH4III ACNGT 4 cut(s) 202, 689, 847, 1327
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 401, 460, 710, 1109, 1223
HpyF3I CTNAG 4 cut(s) 291, 405, 439, 1085
Hsp92II CATG 5 cut(s) 503, 772, 925, 1103, 1272
HspAI GCGC 3 cut(s) 81, 461, 713
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 649, 859, 1462
LmnI GCTCC 2 cut(s) 506, 538
Lsp1109I GCAGC 7 cut(s) 10, 176, 223, 675, 760, 891, 1115
LweI GCATC 5 cut(s) 92, 176, 194, 296, 507
MaeI CTAG 1 cut(s) 794
MaeIII GTNAC 2 cut(s) 557, 913
MalI GATC 3 cut(s) 651, 861, 1464
MboI GATC 3 cut(s) 649, 859, 1462
MboII GAAGA 7 cut(s) 47, 134, 729, 821, 956, 980, 1352
MfeI CAATTG 2 cut(s) 192, 1349
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 3 cut(s) 64, 958, 1290
MlyI GAGTC 3 cut(s) 629, 921, 1165
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 6 cut(s) 234, 273, 339, 644, 926, 1016
MslI CAYNNNNRTG 2 cut(s) 879, 920
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 2 cut(s) 87, 1362
MspR9I CCNGG 2 cut(s) 88, 473
MunI CAATTG 2 cut(s) 192, 1349
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 3 cut(s) 715, 961, 1386
MwoI GCNNNNNNNGC 6 cut(s) 80, 401, 460, 710, 1109, 1223
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 1268
NdeII GATC 3 cut(s) 649, 859, 1462
NlaIII CATG 5 cut(s) 503, 772, 925, 1103, 1272
NlaIV GGNNCC 6 cut(s) 534, 604, 651, 825, 1125, 1274
NmuCI GTSAC 1 cut(s) 913
NruI TCGCGA 1 cut(s) 1386
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 772, 925
NspV TTCGAA 1 cut(s) 1458
PaeI GCATGC 1 cut(s) 772
PasI CCCWGGG 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 6 cut(s) 51, 263, 295, 542, 1027, 1092
PinAI ACCGGT 1 cut(s) 1361
PkrI GCNGC 8 cut(s) 25, 166, 213, 665, 750, 906, 1105, 1219
PleI GAGTC 3 cut(s) 629, 920, 1165
PpsI GAGTC 3 cut(s) 629, 920, 1165
PpuMI RGGWCCY 1 cut(s) 603
PsiI TTATAA 1 cut(s) 1119
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 6 cut(s) 534, 604, 651, 825, 1125, 1274
PspPI GGNCC 1 cut(s) 603
PspPPI RGGWCCY 1 cut(s) 603
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 904
RruI TCGCGA 1 cut(s) 1386
RsaI GTAC 5 cut(s) 468, 487, 671, 1301, 1329
RsaNI GTAC 5 cut(s) 467, 486, 670, 1300, 1328
RseI CAYNNNNRTG 2 cut(s) 879, 920
SaqAI TTAA 6 cut(s) 234, 273, 339, 644, 926, 1016
SatI GCNGC 8 cut(s) 24, 165, 212, 664, 749, 905, 1104, 1218
Sau3AI GATC 3 cut(s) 649, 859, 1462
Sau96I GGNCC 1 cut(s) 603
ScaI AGTACT 1 cut(s) 1329
SchI GAGTC 3 cut(s) 629, 921, 1165
ScrFI CCNGG 2 cut(s) 88, 473
SduI GDGCHC 3 cut(s) 64, 958, 1290
SfaNI GCATC 5 cut(s) 92, 176, 194, 296, 507
SfcI CTRYAG 1 cut(s) 1323
SfuI TTCGAA 1 cut(s) 1458
SinI GGWCC 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 879, 920
SmlI CTYRAG 2 cut(s) 1000, 1107
SmoI CTYRAG 2 cut(s) 1000, 1107
SphI GCATGC 1 cut(s) 772
SsiI CCGC 2 cut(s) 959, 1218
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 2 cut(s) 86, 471
StyI CCWWGG 3 cut(s) 489, 588, 1268
TaaI ACNGT 4 cut(s) 202, 689, 847, 1327
TaqI TCGA 4 cut(s) 107, 145, 935, 1458
TatI WGTACW 1 cut(s) 1327
TauI GCSGC 1 cut(s) 1220
TfiI GAWTC 6 cut(s) 51, 263, 295, 542, 1027, 1092
Tru1I TTAA 6 cut(s) 234, 273, 339, 644, 926, 1016
Tru9I TTAA 6 cut(s) 234, 273, 339, 644, 926, 1016
TscAI CASTG 3 cut(s) 234, 991, 1341
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 7 cut(s) 23, 164, 211, 663, 748, 904, 1103
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 6 cut(s) 17, 30, 957, 970, 1084, 1088
TspRI CASTG 3 cut(s) 234, 991, 1341
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 603
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 5 cut(s) 151, 777, 948, 971, 1039
XceI RCATGY 2 cut(s) 772, 925
XcmI CCANNNNNNNNNTGG 2 cut(s) 424, 1441
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 794
ZrmI AGTACT 1 cut(s) 1329
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.