Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

13269990 .. 13273204

Gene Structure 3215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTAATCCGAAGCAAAAATGGACGGTGGATGAAGAAGAAGCTCTGAGAGCGGGGGTTAGGAAACACGGCACTGGCAAGTGGAAGGACATCCAGAAGGACCCCGAGTTCAACCTCTTCCTCTCCTCTCGCTCCAATATTGATCTCAAGGACAAATGGAGGAATATGACTGTTAGTGGCACGGGCCCCCGGGAAAAATCAAGGCCAAAAACAAAAACAAACCAAGATGCTACTGTTGCTCCAGTGTCTGTTCCCCAGACTTCTGCTGCTGCTCCAGTTAGGCGCGATTCACCAGCAGCAGCAGCTCCAGTTAGACGTGATTCACCAGCAGCAGCTCCAGGCGGACGTGATTTACCAGCAGCAACTCCAGTCAGACGTGATGCACCAGCGGCAACTCCAGTCAGACGCGATGCACCAACAGAAACTCCAGTCAGACGTGATACAACTCCTGTTGCGGATGATTCGGCTATCAGCGTATCTGATGCAATTCCTGCACCAGTGTGCAATGCAATGATTTTTGAAGCTCTTTCAGCCTCAACAGATCCAAATGGATTGGACACTAGTGCTATTGCTAGCTATATTGAGCAAAGGATTGAGGTCCCACAAAATTTTAGAAGGTCATTAACTGGTAGGTTGAGAAGGCTGGTTCTGCAAGACAAACTTGAAAAGATTCAAAACTGCTACAAGGTGAAAATCGATACCGTGAGTGTTAGTAGTGATATGTTAGAGGAATCAGCGCGGGCTGCTGCACATAGCATTGCTGAAGCAGAATACAGATCATATTTGGCAGCAGAAGAAATGAAAGAGGCAGAGAGGATTTATTTTATGGCTGAAAACACAGAATCAATGATGCAGTTGGCTAAGGAGATTTTGGAGCAATGTTCAGAAGGTGAGGTCCTGATGGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.21

Weight (kDa)

6.27

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	9.3e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 57	9.6e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	168 - 225	4.2e-06	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	3 cut(s)	285, 408, 739
AciI	CCGC	5 cut(s)	53, 342, 389, 455, 739
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	783
AfiI	CCNNNNNNNGG	1 cut(s)	904
AgsI	TTSAA	4 cut(s)	112, 521, 665, 674
AhlI	ACTAGT	1 cut(s)	560
AjiI	CACGTC	4 cut(s)	317, 347, 377, 437
AjnI	CCWGG	1 cut(s)	337
AleI	CACNNNNGTG	1 cut(s)	499
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	44, 305, 335, 524, 576
AluI	AGCT	5 cut(s)	44, 305, 335, 524, 576
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	104, 189
AoxI	GGCC	2 cut(s)	184, 203
ApaI	GGGCCC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	607
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	2 cut(s)	285, 739
AspS9I	GGNCC	5 cut(s)	100, 184, 185, 598, 895
AsuC2I	CCSGG	2 cut(s)	190, 191
AsuHPI	GGTGA	4 cut(s)	282, 315, 700, 902
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	2 cut(s)	104, 189
AvaII	GGWCC	3 cut(s)	100, 598, 895
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	188
BccI	CCATC	1 cut(s)	895
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	190, 191
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	561, 573
Bme1390I	CCNGG	3 cut(s)	190, 191, 339
Bme18I	GGWCC	3 cut(s)	100, 598, 895
BmeT110I	CYCGRG	2 cut(s)	104, 189
BmgBI	CACGTC	4 cut(s)	317, 347, 377, 437
BmgT120I	GGNCC	5 cut(s)	100, 184, 185, 598, 895
BmiI	GGNNCC	4 cut(s)	102, 186, 187, 600
BmrFI	CCNGG	3 cut(s)	190, 191, 339
BmsI	GCATC	5 cut(s)	217, 370, 400, 472, 840
BmtI	GCTAGC	1 cut(s)	576
BpmI	CTGGAG	7 cut(s)	225, 258, 291, 321, 351, 381, 411
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	190, 191
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	188, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	904
Bse1I	ACTGG	9 cut(s)	79, 242, 275, 308, 368, 398, 428, 497, 631
Bse3DI	GCAATG	4 cut(s)	511, 516, 756, 884
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	188, 189
BseGI	GGATG	3 cut(s)	37, 90, 463
BseLI	CCNNNNNNNGG	1 cut(s)	904
BseMI	GCAATG	4 cut(s)	511, 516, 756, 884
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	9 cut(s)	79, 242, 275, 308, 368, 398, 428, 497, 631
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	188
BsgI	GTGCAG	2 cut(s)	477, 732
Bsh1236I	CGCG	3 cut(s)	285, 408, 739
BshFI	GGCC	2 cut(s)	186, 205
BshVI	ATCGAT	1 cut(s)	696
BsiHKCI	CYCGRG	2 cut(s)	104, 189
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	904
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	186, 205
BsoBI	CYCGRG	2 cut(s)	104, 189
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	142, 541, 776
BspACI	CCGC	5 cut(s)	53, 342, 389, 455, 739
BspANI	GGCC	2 cut(s)	186, 205
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	696
BspFNI	CGCG	3 cut(s)	285, 408, 739
BspLI	GGNNCC	4 cut(s)	102, 186, 187, 600
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	4 cut(s)	511, 516, 756, 884
BsrI	ACTGG	9 cut(s)	79, 242, 275, 308, 368, 398, 428, 497, 631
BssECI	CCNNGG	2 cut(s)	188, 189
BssMI	GATC	3 cut(s)	142, 541, 776
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	28, 172, 235, 703
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	574, 741
BstDEI	CTNAG	2 cut(s)	47, 861
BstF5I	GGATG	3 cut(s)	37, 90, 463
BstFNI	CGCG	3 cut(s)	285, 408, 739
BstHHI	GCGC	2 cut(s)	285, 739
BstKTI	GATC	3 cut(s)	145, 544, 779
BstMBI	GATC	3 cut(s)	142, 541, 776
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 236, 302, 389, 491, 530, 649, 743
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	188, 189, 337
BstSLI	GKGCMC	1 cut(s)	188
BstUI	CGCG	3 cut(s)	285, 408, 739
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	2 cut(s)	186, 205
BsuTUI	ATCGAT	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	423
BtrI	CACGTC	4 cut(s)	317, 347, 377, 437
BtsCI	GGATG	3 cut(s)	37, 90, 463
BtsIMutI	CAGTG	3 cut(s)	72, 249, 504
Cac8I	GCNNGC	2 cut(s)	574, 741
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	2 cut(s)	285, 739
Cfr13I	GGNCC	5 cut(s)	100, 184, 185, 598, 895
Cfr9I	CCCGGG	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	696
CseI	GACGC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	47, 861
DpnI	GATC	3 cut(s)	144, 543, 778
DpnII	GATC	3 cut(s)	142, 541, 776
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	3 cut(s)	100, 598, 895
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	104, 189
EcoO109I	RGGNCCY	4 cut(s)	100, 185, 598, 895
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	188
FaiI	YATR	6 cut(s)	167, 579, 722, 753, 781, 827
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	2 cut(s)	46, 732
FokI	GGATG	3 cut(s)	44, 77, 470
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	2 cut(s)	561, 573
GlaI	GCGC	2 cut(s)	284, 738
GsuI	CTGGAG	7 cut(s)	225, 258, 291, 321, 351, 381, 411
HaeIII	GGCC	2 cut(s)	186, 205
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	2 cut(s)	285, 739
Hin6I	GCGC	2 cut(s)	283, 737
HinP1I	GCGC	2 cut(s)	283, 737
HinfI	GANTC	6 cut(s)	287, 320, 461, 670, 731, 842
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	4 cut(s)	282, 315, 700, 902
Hpy188I	TCNGA	7 cut(s)	12, 48, 374, 404, 434, 481, 886
Hpy188III	TCNNGA	2 cut(s)	94, 898
HpyAV	CCTTC	5 cut(s)	79, 91, 609, 633, 881
HpyCH4III	ACNGT	4 cut(s)	28, 172, 235, 703
HpyCH4IV	ACGT	4 cut(s)	316, 346, 376, 436
HpyCH4V	TGCA	9 cut(s)	383, 413, 485, 494, 504, 509, 652, 749, 853
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 236, 302, 389, 491, 530, 649, 743
HpyF3I	CTNAG	2 cut(s)	47, 861
HpySE526I	ACGT	4 cut(s)	316, 346, 376, 436
HspAI	GCGC	2 cut(s)	283, 737
Kzo9I	GATC	3 cut(s)	142, 541, 776
LmnI	GCTCC	6 cut(s)	137, 244, 277, 310, 340, 874
LweI	GCATC	5 cut(s)	217, 370, 400, 472, 840
MaeI	CTAG	2 cut(s)	561, 573
MaeII	ACGT	4 cut(s)	316, 346, 376, 436
MalI	GATC	3 cut(s)	144, 543, 778
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	3 cut(s)	142, 541, 776
MboII	GAAGA	4 cut(s)	47, 50, 109, 806
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	486, 607
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	1 cut(s)	499
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	3 cut(s)	190, 191, 339
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	3 cut(s)	285, 408, 739
MwoI	GCNNNNNNNGC	8 cut(s)	50, 236, 302, 389, 491, 530, 649, 743
NciI	CCSGG	2 cut(s)	190, 191
NdeII	GATC	3 cut(s)	142, 541, 776
NheI	GCTAGC	1 cut(s)	572
NlaIV	GGNNCC	4 cut(s)	102, 186, 187, 600
OliI	CACNNNNGTG	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	6 cut(s)	287, 320, 461, 670, 731, 842
PpuMI	RGGWCCY	3 cut(s)	100, 598, 895
Psp5II	RGGWCCY	3 cut(s)	100, 598, 895
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	102, 186, 187, 600
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	5 cut(s)	100, 184, 185, 598, 895
PspPPI	RGGWCCY	3 cut(s)	100, 598, 895
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	623
Sau3AI	GATC	3 cut(s)	142, 541, 776
Sau96I	GGNCC	5 cut(s)	100, 184, 185, 598, 895
ScrFI	CCNGG	3 cut(s)	190, 191, 339
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	5 cut(s)	217, 370, 400, 472, 840
SinI	GGWCC	3 cut(s)	100, 598, 895
SmaI	CCCGGG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	2 cut(s)	486, 607
SsiI	CCGC	5 cut(s)	53, 342, 389, 455, 739
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	561, 573
StyD4I	CCNGG	3 cut(s)	188, 189, 337
TaaI	ACNGT	4 cut(s)	28, 172, 235, 703
TaiI	ACGT	4 cut(s)	319, 349, 379, 439
TaqI	TCGA	1 cut(s)	696
TasI	AATT	2 cut(s)	486, 607
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	6 cut(s)	287, 320, 461, 670, 731, 842
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	3 cut(s)	79, 249, 504
TspDTI	ATGAA	2 cut(s)	48, 815
TspMI	CCCGGG	1 cut(s)	189
TspRI	CASTG	3 cut(s)	79, 249, 504
VpaK11BI	GGWCC	3 cut(s)	100, 598, 895
XapI	RAATTY	1 cut(s)	607
XmaI	CCCGGG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	561, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.