Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

13475656 .. 13477507

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGATGAGATTTGAACTCAACGTACAACTAAAAAAAGACCCTAACCACCAGGATAATCATCGCTTACATATATATGTTATAAAAAACAGAGGAAACTTGCAACCTCTTCCTAAAAAAACCCTTTGCAGCTTTTGGCATTCTCTAAGCAGACACTCCAGCAAACACATCTTCTTAAACTATTTCTCACTGTCCTCTGCTTTTCTCACACTCTCTCTGTTTCCTCTGTTTTTGCAAATCAAGATGTATGCGAGGGAGAGGTTACCGAAAGAAGAAACGTTTTTGAGGCGAAGAAGAAACCCATCCTTCTCTTCTTCGCTACTTGACTCCATCTACCGCTCAATTGATGAATCGAGCGGTGGAGATGGAGATCAGGGTTATGTTCGAGAGTCGACTGCAATGGTCAAGAAACAGAGCAGTTCTACTAAAGGAGACAATGAGAAGGTTAATCTTCGAAGGGCTATTATGATTGAGAATTGGGTCGAGAAGCAGAGCGTTCACAGCTCCATGTTCTCGAACTCCGCTTCGAGTTCCTCGGAGTCGAGCTCAGGAGCTGCATTTTCGTCTTCCGAAACAGATTCGAGCTACAGATCAAGAACAAAACCGAAGGCGGTCGAGCAGAGGTTCGTGCAATTCGAGGAGAAGGAAAAGAGTGAGAGTGGCGGAGGAAGTGCGTTTTCAAAGACGAAGCTACGAGCTTTGAAAATCTATGAAGAATTGAAGAAAATGAAGCAACCAATTTCGCCCGGCGGGCGGATTGTGAACTTCATCAACTCGATTTTCAATTCCGGCAATGTCAAGAAGCCAAAAATGTGTTATGTTGGAGCTGTGGAAGATGTGACCATTACAGAGAATGTGTCGAATTTGAAATCGGCTTGTCCTTCTTCTTCTGCTTCTGCTTCTACTCTCTCAAGGTCTTGCTTGAGCAAACCGTCTTCAAGAGCGAAAAAATCGAGCAATGGCACGAAAAGGTCCGTTAGATTTTACCCAGTGAGTGAGATTCTTGGTGAGGATTCTCAGCCTCCAAACCACCTCAAATGTGTGTTTGAAGAAGACCCAAGCTTGATGCCAAAACCCTCTTTTCAAAAATATGCAAGGGCTTGTCCTGGTAATTATGATAAGCTGATTCAACCGGGTAAGAGTCGAACAGAAGACCTGCTCACATTTAATCGTAGCACAAAATCAACAAGTTACAGAAAGACTGGGGCGATGATGAAGAAAGTGATCGATGATGCTGAGAGCTGTTCAAGTTCTGATCTTTTTGAGCTGAATCATCCAGTTGGGGTTGGAAGGTACATGGAAGAACTTCCTGTGTATGAGACTACTAATTTCAGAACCAATCAAGCTATTGCCCAAGGGTTGTTGGTTTCTACTTTCAAATTCTCGGGGAAGTTATTGGTTGTCTTACTTGTTAATTTCTTGGAGTTCACCCTAATAATTTGGTTTAAGATTATATGTCTAAGCAAACAAAAGATTAATTTGACAAGAAGTGAAAGCAATGAAAACATTATTAAAATAAATGATACGAAAACTTTTTCTTTTCAATATTGTTTGATTGTGAATCTGAATCACCCATTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

527

Amino Acids

59.39

Weight (kDa)

9.63

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	1161
AccBSI	CCGCTC	2 cut(s)	336, 354
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	7 cut(s)	334, 354, 519, 608, 660, 747, 751
AclI	AACGTT	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	859, 1376
AfaI	GTAC	2 cut(s)	24, 1292
AfiI	CCNNNNNNNGG	1 cut(s)	750
AjnI	CCWGG	2 cut(s)	48, 1102
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	423, 1310
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	1381
ApeKI	GCWGC	2 cut(s)	126, 551
ApoI	RAATTY	2 cut(s)	859, 1376
AseI	ATTAAT	1 cut(s)	1473
Asp700I	GAANNNNTTC	1 cut(s)	1302
AspS9I	GGNCC	1 cut(s)	969
AsuC2I	CCSGG	2 cut(s)	744, 1131
AsuHPI	GGTGA	3 cut(s)	1016, 1417, 1559
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	1381
AvaII	GGWCC	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	545
BbsI	GAAGAC	4 cut(s)	555, 924, 1056, 1155
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	138, 538
BccI	CCATC	3 cut(s)	307, 335, 356
BciT130I	CCWGG	2 cut(s)	50, 1104
BcnI	CCSGG	2 cut(s)	744, 1131
BcoDI	GTCTC	2 cut(s)	423, 1310
BfmI	CTRYAG	1 cut(s)	583
BfuAI	ACCTGC	1 cut(s)	1161
BglI	GCCNNNNNGGC	1 cut(s)	748
BisI	GCNGC	2 cut(s)	127, 552
BlsI	GCNGC	2 cut(s)	128, 553
Bme1390I	CCNGG	4 cut(s)	50, 744, 1104, 1131
Bme18I	GGWCC	1 cut(s)	969
BmeT110I	CYCGRG	1 cut(s)	1381
BmgT120I	GGNCC	1 cut(s)	969
BmrFI	CCNGG	4 cut(s)	50, 744, 1104, 1131
BmrI	ACTGGG	2 cut(s)	980, 1209
BmsI	GCATC	2 cut(s)	1053, 1219
BmuI	ACTGGG	2 cut(s)	980, 1209
BpiI	GAAGAC	4 cut(s)	555, 924, 1056, 1155
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	544
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	892, 940
BpuMI	CCSGG	2 cut(s)	744, 1131
Bsa29I	ATCGAT	1 cut(s)	1224
BsaBI	GATNNNNATC	2 cut(s)	57, 366
BsaJI	CCNNGG	2 cut(s)	531, 1351
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse1I	ACTGG	3 cut(s)	986, 1204, 1274
Bse3DI	GCAATG	4 cut(s)	402, 796, 961, 1501
Bse8I	GATNNNNATC	2 cut(s)	57, 366
BseBI	CCWGG	2 cut(s)	50, 1104
BseCI	ATCGAT	1 cut(s)	1224
BseDI	CCNNGG	2 cut(s)	531, 1351
BseGI	GGATG	2 cut(s)	299, 1270
BseJI	GATNNNNATC	2 cut(s)	57, 366
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseMI	GCAATG	4 cut(s)	402, 796, 961, 1501
BseMII	CTCAG	3 cut(s)	558, 1028, 1224
BseNI	ACTGG	3 cut(s)	986, 1204, 1274
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	138, 538
Bsh1285I	CGRYCG	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	1224
BsiEI	CGRYCG	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	1381
BsiSI	CCGG	3 cut(s)	744, 786, 1130
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmAI	GTCTC	2 cut(s)	423, 1310
BsmI	GAATGC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	1381
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	4 cut(s)	367, 587, 1221, 1252
BspACI	CCGC	7 cut(s)	334, 354, 519, 608, 660, 747, 751
BspCNI	CTCAG	3 cut(s)	557, 1027, 1225
BspDI	ATCGAT	1 cut(s)	1224
BspMI	ACCTGC	1 cut(s)	1161
BspT104I	TTCGAA	1 cut(s)	451
BsrBI	CCGCTC	2 cut(s)	336, 354
BsrDI	GCAATG	4 cut(s)	402, 796, 961, 1501
BsrI	ACTGG	3 cut(s)	986, 1204, 1274
BssECI	CCNNGG	2 cut(s)	531, 1351
BssMI	GATC	4 cut(s)	367, 587, 1221, 1252
BssT1I	CCWWGG	1 cut(s)	1351
Bst2UI	CCWGG	2 cut(s)	50, 1104
Bst4CI	ACNGT	2 cut(s)	189, 930
Bst6I	CTCTTC	2 cut(s)	111, 313
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	749
BstDEI	CTNAG	5 cut(s)	143, 544, 1014, 1233, 1457
BstEII	GGTNACC	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	299, 1270
BstKTI	GATC	4 cut(s)	370, 590, 1224, 1255
BstMAI	GTCTC	2 cut(s)	423, 1310
BstMBI	GATC	4 cut(s)	367, 587, 1221, 1252
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	498, 748
BstNI	CCWGG	2 cut(s)	50, 1104
BstPI	GGTNACC	1 cut(s)	258
BstSCI	CCNGG	4 cut(s)	48, 742, 1102, 1129
BstSFI	CTRYAG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	138, 538
BstV2I	GAAGAC	4 cut(s)	555, 924, 1056, 1155
Bsu15I	ATCGAT	1 cut(s)	1224
BsuTUI	ATCGAT	1 cut(s)	1224
BtgZI	GCGATG	2 cut(s)	44, 1220
BtsCI	GGATG	2 cut(s)	299, 1270
BtsIMutI	CAGTG	2 cut(s)	185, 993
BveI	ACCTGC	1 cut(s)	1161
Cac8I	GCNNGC	1 cut(s)	749
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	969
ClaI	ATCGAT	1 cut(s)	1224
Csp6I	GTAC	2 cut(s)	23, 1291
CviAII	CATG	2 cut(s)	505, 1294
CviQI	GTAC	2 cut(s)	23, 1291
DdeI	CTNAG	5 cut(s)	143, 544, 1014, 1233, 1457
DpnI	GATC	4 cut(s)	369, 589, 1223, 1254
DpnII	GATC	4 cut(s)	367, 587, 1221, 1252
Eam1104I	CTCTTC	2 cut(s)	111, 313
EarI	CTCTTC	2 cut(s)	111, 313
EciI	GGCGGA	2 cut(s)	675, 766
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	1351
Eco24I	GRGCYC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	969
Eco53kI	GAGCTC	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	1381
Eco91I	GGTNACC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	48, 1102
EcoT14I	CCWWGG	1 cut(s)	1351
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	1351
FaeI	CATG	2 cut(s)	508, 1297
FatI	CATG	2 cut(s)	504, 1293
FauI	CCCGC	1 cut(s)	740
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	127, 552
FokI	GGATG	2 cut(s)	286, 1257
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	2 cut(s)	127, 552
GluI	GCNGC	2 cut(s)	127, 552
GsuI	CTGGAG	1 cut(s)	139
HapII	CCGG	3 cut(s)	744, 786, 1130
Hin1II	CATG	2 cut(s)	508, 1297
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	1057
HpaII	CCGG	3 cut(s)	744, 786, 1130
HphI	GGTGA	3 cut(s)	1016, 1417, 1559
Hpy166II	GTNNAC	4 cut(s)	390, 496, 760, 1425
Hpy188I	TCNGA	5 cut(s)	535, 568, 1252, 1331, 1563
Hpy188III	TCNNGA	9 cut(s)	238, 383, 403, 481, 511, 546, 591, 796, 936
Hpy8I	GTNNAC	4 cut(s)	390, 496, 760, 1425
HpyAV	CCTTC	7 cut(s)	313, 433, 447, 598, 634, 888, 1281
HpyCH4III	ACNGT	2 cut(s)	189, 930
HpyCH4IV	ACGT	2 cut(s)	21, 275
HpyCH4V	TGCA	7 cut(s)	100, 126, 232, 395, 554, 628, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	498, 748
HpyF3I	CTNAG	5 cut(s)	143, 544, 1014, 1233, 1457
HpySE526I	ACGT	2 cut(s)	21, 275
Hsp92II	CATG	2 cut(s)	508, 1297
Kzo9I	GATC	4 cut(s)	367, 587, 1221, 1252
LmnI	GCTCC	3 cut(s)	506, 548, 821
Lsp1109I	GCAGC	2 cut(s)	138, 538
LweI	GCATC	2 cut(s)	1053, 1219
MaeII	ACGT	2 cut(s)	21, 275
MaeIII	GTNAC	3 cut(s)	258, 835, 1187
MalI	GATC	4 cut(s)	369, 589, 1223, 1254
MbiI	CCGCTC	2 cut(s)	336, 354
MboI	GATC	4 cut(s)	367, 587, 1221, 1252
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	545
MlyI	GAGTC	4 cut(s)	317, 395, 545, 1147
MmeI	TCCRAC	2 cut(s)	799, 1264
MroXI	GAANNNNTTC	1 cut(s)	1302
MseI	TTAA	9 cut(s)	173, 444, 1164, 1410, 1443, 1473, 1509, 1574, 1579
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	3 cut(s)	744, 786, 1130
MspR9I	CCNGG	4 cut(s)	50, 744, 1104, 1131
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	50, 1104
MwoI	GCNNNNNNNGC	2 cut(s)	498, 748
NciI	CCSGG	2 cut(s)	744, 1131
NdeII	GATC	4 cut(s)	367, 587, 1221, 1252
NlaIII	CATG	2 cut(s)	508, 1297
NmuCI	GTSAC	1 cut(s)	835
NspV	TTCGAA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	1302
PfeI	GAWTC	8 cut(s)	347, 575, 997, 1010, 1123, 1267, 1558, 1564
PkrI	GCNGC	2 cut(s)	128, 553
PleI	GAGTC	4 cut(s)	317, 394, 544, 1146
PpsI	GAGTC	4 cut(s)	317, 394, 544, 1146
PshBI	ATTAAT	1 cut(s)	1473
PsiI	TTATAA	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	545
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	48, 1102
PspEI	GGTNACC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	48, 1102
PspPI	GGNCC	1 cut(s)	969
PsrI	GAACNNNNNNTAC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	24, 1292
RsaNI	GTAC	2 cut(s)	23, 1291
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	9 cut(s)	173, 444, 1164, 1410, 1443, 1473, 1509, 1574, 1579
SatI	GCNGC	2 cut(s)	127, 552
Sau3AI	GATC	4 cut(s)	367, 587, 1221, 1252
Sau96I	GGNCC	1 cut(s)	969
SchI	GAGTC	4 cut(s)	317, 395, 545, 1147
ScrFI	CCNGG	4 cut(s)	50, 744, 1104, 1131
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	2 cut(s)	1053, 1219
SfcI	CTRYAG	1 cut(s)	583
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	1 cut(s)	969
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	907, 919
SmoI	CTYRAG	2 cut(s)	907, 919
SsiI	CCGC	7 cut(s)	334, 354, 519, 608, 660, 747, 751
SspI	AATATT	1 cut(s)	1544
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	4 cut(s)	48, 742, 1102, 1129
StyI	CCWWGG	1 cut(s)	1351
TaaI	ACNGT	2 cut(s)	189, 930
TaiI	ACGT	2 cut(s)	24, 278
TfiI	GAWTC	8 cut(s)	347, 575, 997, 1010, 1123, 1267, 1558, 1564
Tru1I	TTAA	9 cut(s)	173, 444, 1164, 1410, 1443, 1473, 1509, 1574, 1579
Tru9I	TTAA	9 cut(s)	173, 444, 1164, 1410, 1443, 1473, 1509, 1574, 1579
TscAI	CASTG	2 cut(s)	192, 993
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	2 cut(s)	126, 551
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	6 cut(s)	360, 723, 740, 754, 1226, 1512
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	2 cut(s)	192, 993
VpaK11BI	GGWCC	1 cut(s)	969
VspI	ATTAAT	1 cut(s)	1473
XapI	RAATTY	2 cut(s)	859, 1376
XmiI	GTMKAC	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.