Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

15635094 .. 15636610

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGACTCCATCGTCAATCAGGAAAGTCACGAGGTCTCAGACTTCGGTCGCTCAGAACAGCAGCAACATTCCCCTTTCAAGAAAGACTGAAGATTCTGAGAAGGCTCTCTCAAAATCGAGACCAAGAAATGGGAAGCAACAACAAGATTGGTCGGCACTGATTGACATCACCAACGATTCTCCGATTGTTGGACTTGCAATGGGAAGCTTGGAGACTCCATCATCGGCCATACTCAAACAGAGAAGCTGCAGAGCCAAGAACACACCTGGGTCCGGAGAGGCCTTGCTGAGAGGTCAAGTCAAGACCCTTTTGCAGCAAGTTGAAGAGGAGGCTGAGTTCTCAAAGATATCGCTCGAAAGCCGCCCTATTTGCCTTATTCAAGGCCTTATCGCCAACTCTCCGATGGGACTCCTGGCGCCAACGCCAGCGAACACGCCACAGGTGGTATGTGACATCTTAGAAGGAAAAAATCAGGGGAGCCTCGAATCTCAGAAGAGTATCCTGAGCCGCTCTCTGCTGCTGGATTTCTCCGAGAAGTCCGAAATCTCCTCACTTTCATCAGAGTGCTCCTCTGTGATTACCGACAGCAAGGAGAAGTCATCATCCCCAGATGATGACAATGCTTCCATCTGGTCGATGCAGGTCAATGCTAGCACCCATGATGAAGATGAGGAAGAAGCAACCGATGAAGAAGAAGACTATTATCTGAAGCTGAATGAATGTTATGGAATGGAAGAAGAAAAGAAGCAAGATGGAGGATACAATGTGAATGAGCTTTGTGATGGCATTAGCAATATTTGCGTCGATGAGACGAGAAGGATTCCCAAGTTTGAAGGAAAGCATACCAGATTTGCGTATGACAGTGAAGATGAAATCGTTGAAGAAGAAGAAGAAGAAGATTCTGCAAAGACTCCGGAATCATCTTCACCAGGTGCCCTGCGGCTGAAGGGATTGCCAACACCAAAGGGGAAGCACCTACGGTTTCTTGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

36.81

Weight (kDa)

4.61

Isoelectric Point (pI)

71.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	418, 935
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	513
AccIII	TCCGGA	2 cut(s)	275, 916
AciI	CCGC	3 cut(s)	364, 511, 943
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	3 cut(s)	111, 731, 968
AcyI	GRCGYC	1 cut(s)	419
AdeI	CACNNNGTG	1 cut(s)	935
AfiI	CCNNNNNNNGG	3 cut(s)	131, 191, 275
AgsI	TTSAA	5 cut(s)	81, 326, 383, 836, 884
AjnI	CCWGG	3 cut(s)	268, 414, 931
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	210, 249, 715, 778
AluI	AGCT	4 cut(s)	210, 249, 715, 778
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	4 cut(s)	42, 115, 209, 806
Aor13HI	TCCGGA	2 cut(s)	275, 916
AoxI	GGCC	3 cut(s)	228, 282, 385
ApeKI	GCWGC	4 cut(s)	63, 249, 316, 520
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	163, 921
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	418, 935
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	4 cut(s)	75, 236, 328, 507
BccI	CCATC	6 cut(s)	19, 229, 400, 638, 749, 779
BciT130I	CCWGG	3 cut(s)	270, 416, 933
BciVI	GTATCC	2 cut(s)	512, 755
BcoDI	GTCTC	4 cut(s)	42, 115, 209, 806
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	2 cut(s)	512, 755
BisI	GCNGC	7 cut(s)	64, 250, 317, 364, 511, 521, 944
BlsI	GCNGC	7 cut(s)	65, 251, 318, 365, 512, 522, 945
Bme1390I	CCNGG	3 cut(s)	270, 416, 933
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	4 cut(s)	274, 420, 482, 937
BmrFI	CCNGG	3 cut(s)	270, 416, 933
BmsI	GCATC	1 cut(s)	630
BmtI	GCTAGC	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 557, 589
Bpu10I	CCTNAGC	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	419
BsaI	GGTCTC	2 cut(s)	42, 115
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	2 cut(s)	275, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 191, 275
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	167
BseAI	TCCGGA	2 cut(s)	275, 916
BseBI	CCWGG	3 cut(s)	270, 416, 933
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	605
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	131, 191, 275
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	7 cut(s)	53, 68, 90, 281, 327, 497, 506
BseRI	GAGGAG	3 cut(s)	344, 541, 562
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	4 cut(s)	75, 236, 328, 507
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	230, 284, 387
BshNI	GGYRCC	2 cut(s)	418, 935
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	276, 917
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	3 cut(s)	131, 191, 275
BsmAI	GTCTC	4 cut(s)	42, 115, 209, 806
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	230, 284, 387
Bso31I	GGTCTC	2 cut(s)	42, 115
Bsp1286I	GDGCHC	2 cut(s)	572, 940
Bsp13I	TCCGGA	2 cut(s)	275, 916
BspACI	CCGC	3 cut(s)	364, 511, 943
BspANI	GGCC	3 cut(s)	230, 284, 387
BspCNI	CTCAG	7 cut(s)	52, 67, 91, 282, 328, 498, 505
BspEI	TCCGGA	2 cut(s)	275, 916
BspLI	GGNNCC	4 cut(s)	274, 420, 482, 937
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	657
BspT107I	GGYRCC	2 cut(s)	418, 935
BspTNI	GGTCTC	2 cut(s)	42, 115
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	269
BssNI	GRCGYC	1 cut(s)	419
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	270, 416, 933
Bst4CI	ACNGT	2 cut(s)	866, 984
Bst6I	CTCTTC	2 cut(s)	321, 491
BstACI	GRCGYC	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	429, 655
BstDEI	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 460, 492, 506
BstF5I	GGATG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstMAI	GTCTC	4 cut(s)	42, 115, 209, 806
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 801
BstNI	CCWGG	3 cut(s)	270, 416, 933
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	268, 414, 931
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	940
BstV1I	GCAGC	4 cut(s)	75, 236, 328, 507
BstV2I	GAAGAC	1 cut(s)	705
BsuI	GTATCC	2 cut(s)	512, 755
BsuRI	GGCC	3 cut(s)	230, 284, 387
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	158, 871
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	429, 655
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	793
CsiI	ACCWGGT	1 cut(s)	931
CviAII	CATG	1 cut(s)	662
DdeI	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 460, 492, 506
DinI	GGCGCC	1 cut(s)	420
DraIII	CACNNNGTG	1 cut(s)	935
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	321, 491
EarI	CTCTTC	2 cut(s)	321, 491
Eco147I	AGGCCT	2 cut(s)	284, 387
Eco31I	GGTCTC	2 cut(s)	42, 115
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	3 cut(s)	111, 731, 968
EcoRII	CCWGG	3 cut(s)	268, 414, 931
EcoRV	GATATC	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	1 cut(s)	665
FaiI	YATR	6 cut(s)	233, 451, 663, 729, 846, 861
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	661
Fnu4HI	GCNGC	7 cut(s)	64, 250, 317, 364, 511, 521, 944
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	7 cut(s)	64, 250, 317, 364, 511, 521, 944
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	7 cut(s)	64, 250, 317, 364, 511, 521, 944
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	230, 284, 387
HapII	CCGG	2 cut(s)	276, 917
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	665
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	208
HpaII	CCGG	2 cut(s)	276, 917
HphI	GGTGA	2 cut(s)	163, 921
Hpy188III	TCNNGA	9 cut(s)	22, 31, 81, 120, 276, 304, 505, 917, 989
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	5 cut(s)	97, 458, 813, 830, 943
HpyCH4III	ACNGT	2 cut(s)	866, 984
HpyCH4V	TGCA	5 cut(s)	200, 252, 316, 643, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 801
HpyF3I	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 460, 492, 506
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	665
HspAI	GCGC	1 cut(s)	419
KasI	GGCGCC	1 cut(s)	418
Kpn2I	TCCGGA	2 cut(s)	275, 916
LmnI	GCTCC	2 cut(s)	480, 575
Lsp1109I	GCAGC	4 cut(s)	75, 236, 328, 507
LweI	GCATC	1 cut(s)	630
MabI	ACCWGGT	1 cut(s)	931
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	28, 452
MbiI	CCGCTC	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	572, 940
Mly113I	GGCGCC	1 cut(s)	419
MlyI	GAGTC	3 cut(s)	211, 405, 907
MmeI	TCCRAC	1 cut(s)	172
MroI	TCCGGA	2 cut(s)	275, 916
MslI	CAYNNNNRTG	1 cut(s)	565
MspI	CCGG	2 cut(s)	276, 917
MspR9I	CCNGG	3 cut(s)	270, 416, 933
MvaI	CCWGG	3 cut(s)	270, 416, 933
MwoI	GCNNNNNNNGC	2 cut(s)	372, 801
NarI	GGCGCC	1 cut(s)	419
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	1 cut(s)	665
NlaIV	GGNNCC	4 cut(s)	274, 420, 482, 937
NmuCI	GTSAC	2 cut(s)	28, 452
PceI	AGGCCT	2 cut(s)	284, 387
PfeI	GAWTC	6 cut(s)	95, 179, 488, 823, 902, 920
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	65, 251, 318, 365, 512, 522, 945
PleI	GAGTC	3 cut(s)	211, 405, 907
PluTI	GGCGCC	1 cut(s)	422
PpsI	GAGTC	3 cut(s)	211, 405, 907
PshAI	GACNNNNGTC	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	268, 414, 931
PspGI	CCWGG	3 cut(s)	268, 414, 931
PspN4I	GGNNCC	4 cut(s)	274, 420, 482, 937
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	565
SatI	GCNGC	7 cut(s)	64, 250, 317, 364, 511, 521, 944
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	3 cut(s)	211, 405, 907
ScrFI	CCNGG	3 cut(s)	270, 416, 933
SduI	GDGCHC	2 cut(s)	572, 940
SexAI	ACCWGGT	1 cut(s)	931
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	420
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SseBI	AGGCCT	2 cut(s)	284, 387
SsiI	CCGC	3 cut(s)	364, 511, 943
SspDI	GGCGCC	1 cut(s)	418
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	2 cut(s)	284, 387
StyD4I	CCNGG	3 cut(s)	268, 414, 931
TaaI	ACNGT	2 cut(s)	866, 984
TaqI	TCGA	5 cut(s)	119, 357, 486, 638, 807
TaqII	GACCGA	1 cut(s)	37
TauI	GCSGC	3 cut(s)	366, 513, 946
TfiI	GAWTC	6 cut(s)	95, 179, 488, 823, 902, 920
TscAI	CASTG	2 cut(s)	165, 871
TseFI	GTSAC	2 cut(s)	28, 452
TseI	GCWGC	4 cut(s)	63, 249, 316, 520
Tsp45I	GTSAC	2 cut(s)	28, 452
TspDTI	ATGAA	5 cut(s)	549, 681, 705, 735, 888
TspRI	CASTG	2 cut(s)	165, 871
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.