pycom15g21990

Protein FMP32, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002615
Physical Location & Seq
Forward (+)
15990930 .. 15991627
698 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGCCGCTGCTGCGGCTTCTAGACGGGTCGCCCAATTGGGGACCGGGTCCGGGATCGGATTATCCGGTTTCGGAGGGCCCGGTGGTGCTTCGAGAACGGTGTCTCCGTCGGTGGAGTACAGGCATTTGGATTGCAGGCTGACTTCTCAGCTAGTCAAATCAAATGGAAAGCGGTTGTTTCTCGTCGATACATTAGCTCTGGTTAGGAGATTAGAGGGACAAGGCGTCCCCTCGAAGCACGCGGAGGCGATAACTGCTGCCATTACTGAAGTTTTGAATGACAGCTTGGAAAATGTGTCTCATTCATTTGTTACAAAAGGAGAGATGCAGAAAACGGAGATGATCGAAGAATCCAACTTGTCCAAATTCAAATCCGAAATTCAAAGTGCGCAGGTACTTACTAGCTCTTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1640

Protein Analysis

139

Amino Acids

14.66

Weight (kDa)

9.3

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC90-like PF07798 62 - 131 1.3e-17 Coiled-coil domain-containing protein 90-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 382
AccII CGCG 1 cut(s) 242
AciI CCGC 4 cut(s) 6, 14, 172, 242
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 365, 378
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 119, 396
AfiI CCNNNNNNNGG 2 cut(s) 39, 51
AgsI TTSAA 3 cut(s) 277, 370, 383
AhdI GACNNNNNGTC 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 151, 197, 285, 405
AluI AGCT 4 cut(s) 151, 197, 285, 405
Alw26I GTCTC 2 cut(s) 108, 303
AlwI GGATC 1 cut(s) 62
AoxI GGCC 2 cut(s) 3, 77
ApaI GGGCCC 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 8, 11, 257
ApoI RAATTY 2 cut(s) 365, 378
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 4 cut(s) 42, 48, 77, 78
AsuC2I CCSGG 3 cut(s) 46, 52, 81
AvaII GGWCC 2 cut(s) 42, 48
BaeGI GKGCMC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 244
BcnI CCSGG 3 cut(s) 46, 52, 81
BcoDI GTCTC 2 cut(s) 108, 303
BfaI CTAG 3 cut(s) 21, 152, 402
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 5 cut(s) 6, 9, 12, 15, 258
BlsI GCNGC 5 cut(s) 7, 10, 13, 16, 259
Bme1390I CCNGG 3 cut(s) 46, 52, 81
Bme18I GGWCC 2 cut(s) 42, 48
BmeRI GACNNNNNGTC 1 cut(s) 224
BmgT120I GGNCC 4 cut(s) 42, 48, 77, 78
BmiI GGNNCC 3 cut(s) 43, 49, 79
BmrFI CCNGG 3 cut(s) 46, 52, 81
BmsI GCATC 1 cut(s) 315
BpuMI CCSGG 3 cut(s) 46, 52, 81
BsaHI GRCGYC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 51
BseLI CCNNNNNNNGG 2 cut(s) 39, 51
BseMII CTCAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 79
BsiSI CCGG 4 cut(s) 45, 51, 66, 81
BslFI GGGAC 3 cut(s) 55, 212, 231
BslI CCNNNNNNNGG 2 cut(s) 39, 51
BsmAI GTCTC 2 cut(s) 108, 303
BsmFI GGGAC 3 cut(s) 55, 212, 231
BsnI GGCC 2 cut(s) 5, 79
Bsp120I GGGCCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 54, 342
BspACI CCGC 4 cut(s) 6, 14, 172, 242
BspANI GGCC 2 cut(s) 5, 79
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 3 cut(s) 43, 49, 79
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 1 cut(s) 62
BssMI GATC 2 cut(s) 54, 342
BssNI GRCGYC 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 137, 240
BstDEI CTNAG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 57, 345
BstMAI GTCTC 2 cut(s) 108, 303
BstMBI GATC 2 cut(s) 54, 342
BstMWI GCNNNNNNNGC 3 cut(s) 11, 14, 254
BstSCI CCNGG 3 cut(s) 44, 50, 79
BstSLI GKGCMC 1 cut(s) 81
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 5, 79
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 137, 240
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 4 cut(s) 42, 48, 77, 78
CseI GACGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 118, 395
CviJI RGCY 8 cut(s) 5, 17, 79, 139, 151, 197, 285, 405
CviKI_1 RGCY 8 cut(s) 5, 17, 79, 139, 151, 197, 285, 405
CviQI GTAC 2 cut(s) 118, 395
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 56, 344
DpnII GATC 2 cut(s) 54, 342
DriI GACNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 42, 48
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 81
FaqI GGGAC 3 cut(s) 55, 212, 231
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 15, 258
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 15, 258
FspBI CTAG 3 cut(s) 21, 152, 402
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 1 cut(s) 390
GluI GCNGC 5 cut(s) 6, 9, 12, 15, 258
HaeIII GGCC 2 cut(s) 5, 79
HapII CCGG 4 cut(s) 45, 51, 66, 81
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 1 cut(s) 350
HpaII CCGG 4 cut(s) 45, 51, 66, 81
Hpy188I TCNGA 3 cut(s) 59, 74, 376
Hpy188III TCNNGA 2 cut(s) 21, 93
Hpy99I CGWCG 2 cut(s) 112, 188
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 135, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 14, 254
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 54, 342
LpnPI CCDG 8 cut(s) 58, 64, 79, 94, 106, 121, 185, 377
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 315
MaeI CTAG 3 cut(s) 21, 152, 402
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 56, 344
MboI GATC 2 cut(s) 54, 342
MboII GAAGA 1 cut(s) 359
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 35, 365, 378
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 68, 208, 238, 241
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 4 cut(s) 45, 51, 66, 81
MspR9I CCNGG 3 cut(s) 46, 52, 81
MunI CAATTG 1 cut(s) 35
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 11, 14, 254
NciI CCSGG 3 cut(s) 46, 52, 81
NdeII GATC 2 cut(s) 54, 342
NlaIV GGNNCC 3 cut(s) 43, 49, 79
NsbI TGCGCA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 5 cut(s) 7, 10, 13, 16, 259
PspN4I GGNNCC 3 cut(s) 43, 49, 79
PspOMI GGGCCC 1 cut(s) 77
PspPI GGNCC 4 cut(s) 42, 48, 77, 78
PsyI GACNNNGTC 1 cut(s) 46
RsaI GTAC 2 cut(s) 119, 396
RsaNI GTAC 2 cut(s) 118, 395
SatI GCNGC 5 cut(s) 6, 9, 12, 15, 258
Sau3AI GATC 2 cut(s) 54, 342
Sau96I GGNCC 4 cut(s) 42, 48, 77, 78
ScrFI CCNGG 3 cut(s) 46, 52, 81
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 153, 199, 287, 396, 407
SfaNI GCATC 1 cut(s) 315
SinI GGWCC 2 cut(s) 42, 48
Sse9I AATT 3 cut(s) 35, 365, 378
SsiI CCGC 4 cut(s) 6, 14, 172, 242
SspMI CTAG 3 cut(s) 21, 152, 402
StyD4I CCNGG 3 cut(s) 44, 50, 79
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 92, 186, 233, 345
TasI AATT 3 cut(s) 35, 365, 378
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 8, 17
TfiI GAWTC 1 cut(s) 350
TseI GCWGC 3 cut(s) 8, 11, 257
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 3 cut(s) 96, 350, 401
Tth111I GACNNNGTC 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 42, 48
XapI RAATTY 2 cut(s) 365, 378
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 3 cut(s) 21, 152, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.