pycom15g22820

Nucleolar protein 6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
16914872 .. 16916313
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22820.3

Sequence Viewer

Length: 312 bp
ATGCTTATGGAAGAAACTGAAGAAATTCTCAAGAAAACTTTCCTTGGATGGAAGGAATTACAAGAGGCATTATTTTTGCTGAAGGTCTGGGCTCGTCGGAGGGCACCGATATATGCTTATGACTGCTTGAGTGGATATCTAATCTCTGTCATACTGTCATACCTAGATGATAGGAATTGTTTTAAAAAGTCAATGACGACAATGCACTTTTACTTTGAGCTTCCTTGCGAATTCAGAACTTTGGAAACATGGGCTCTACTTTACACCGAAAGACCAAAATGCTATACTAAAGGAGAAAAGGTTGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

104

Amino Acids

12.37

Weight (kDa)

7.62

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 24, 230
AcuI CTGAAG 2 cut(s) 39, 101
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
ApoI RAATTY 2 cut(s) 24, 230
Asp700I GAANNNNTTC 2 cut(s) 24, 38
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 94, 256
BccI CCATC 1 cut(s) 42
BfaI CTAG 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 14, 148
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 103
Bsp1286I GDGCHC 3 cut(s) 94, 106, 256
BspLI GGNNCC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 156
BstF5I GGATG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 53
CviAII CATG 1 cut(s) 249
CviJI RGCY 3 cut(s) 92, 220, 254
CviKI_1 RGCY 3 cut(s) 92, 220, 254
DraI TTTAAA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 94, 256
Eco32I GATATC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 39, 101
EcoRI GAATTC 1 cut(s) 230
EcoRV GATATC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 94, 256
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 252
FaiI YATR 8 cut(s) 8, 112, 114, 120, 152, 160, 250, 285
FatI CATG 1 cut(s) 248
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 2 cut(s) 94, 256
FspBI CTAG 1 cut(s) 164
Hin1II CATG 1 cut(s) 252
Hpy188I TCNGA 2 cut(s) 99, 236
Hpy188III TCNNGA 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 46, 76
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 205
Hsp92II CATG 1 cut(s) 252
LpnPI CCDG 1 cut(s) 73
MaeI CTAG 1 cut(s) 164
MboII GAAGA 2 cut(s) 23, 32
MhlI GDGCHC 3 cut(s) 94, 106, 256
MluCI AATT 4 cut(s) 24, 56, 175, 230
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 58, 93
MroXI GAANNNNTTC 2 cut(s) 24, 38
MseI TTAA 2 cut(s) 183, 310
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 24, 38
PspN4I GGNNCC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 183, 310
SduI GDGCHC 3 cut(s) 94, 106, 256
SetI ASST 4 cut(s) 87, 165, 222, 303
SgeI CNNG 9 cut(s) 43, 56, 74, 100, 105, 139, 176, 237, 261
SmlI CTYRAG 2 cut(s) 29, 127
SmoI CTYRAG 2 cut(s) 29, 127
Sse9I AATT 4 cut(s) 24, 56, 175, 230
SspMI CTAG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 156
TasI AATT 4 cut(s) 24, 56, 175, 230
Tru1I TTAA 2 cut(s) 183, 310
Tru9I TTAA 2 cut(s) 183, 310
XapI RAATTY 2 cut(s) 24, 230
XmnI GAANNNNTTC 2 cut(s) 24, 38
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.