Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8155004.1

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 484

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8155004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 319 bp

ctgcagcggaataacgttcgtgctgtgagtaaagggggcattcctcagtggactcccaagtacaatagtagtattttggaagacatgtttatagaagatacagaacaacttgtcaagcaaacttttcttgggtcaaaggaattacgagaaggtttagttttgctgaaggtctgggctcgccgcaggataccaatttatgcttatgattgcctgaatggttttttaatctctgtcatattggcatatcttgtggataggaaccatatcaataaatcaatgaaggcaatgcaaatatttcgtgttacaatgaaattcattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

106

Amino Acids

12.39

Weight (kDa)

9.86

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	7, 181
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciVI	GTATCC	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	5, 181
BlsI	GCNGC	2 cut(s)	6, 182
BmiI	GGNNCC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	7, 181
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	260
BspMAI	CTGCAG	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	2
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	1 cut(s)	176
CviKI_1	RGCY	1 cut(s)	176
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	1 cut(s)	88
FaiI	YATR	7 cut(s)	86, 92, 198, 204, 236, 244, 264
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	5, 181
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	5, 181
GluI	GCNGC	2 cut(s)	5, 181
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	143, 160, 274
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	4, 289
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	157, 169, 224
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	92, 107
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	140, 192, 311
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	6, 182
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	6
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	2 cut(s)	5, 181
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	3 cut(s)	18, 154, 171
SfcI	CTRYAG	1 cut(s)	2
Sse9I	AATT	3 cut(s)	140, 192, 311
SsiI	CCGC	2 cut(s)	7, 181
SspI	AATATT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	18
TasI	AATT	3 cut(s)	140, 192, 311
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	293, 304
TspRI	CASTG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.