Rmu_sc0015713.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015713.1
OG0010610
Physical Location & Seq
Forward (+)
38810 .. 39232
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015713.1_g000008.1.cds

Sequence Viewer

Length: 423 bp
atgagggcgacttggggtatcacggataatgtgttgttgcggcctctatggaatggggggttctttagtcatcctgaattgggatgggcgtgtttttacaagtaccaactgaagtgcgagttatcgtttctgatacctgatgagatgcaatacttgctatcttgtcttaatatttctatgggtcaactatcgcctaatgcattgaggcatcttatgggagtcttgttgctatggaaggttagcaaacaacagtgtcccagcataaatgagtttagttccatgtttaagatgcaatattcaacgaagactggcaatagcgggtgtgtgaattttagggcccgtgggcgcatagtcattaaagattttccctccaatatttacactcggtggaggggcaaaccttgtctcattggtggcctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.08

Weight (kDa)

9.54

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 40, 318
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 410
AoxI GGCC 3 cut(s) 41, 336, 415
ApaI GGGCCC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 328
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 336, 337
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 311
BccI CCATC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 410
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 336, 337
BmiI GGNNCC 1 cut(s) 338
BmsI GCATC 3 cut(s) 135, 217, 279
BpiI GAAGAC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 70, 89
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 3 cut(s) 43, 338, 417
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 3 cut(s) 43, 338, 417
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 340
BspACI CCGC 2 cut(s) 40, 318
BspANI GGCC 3 cut(s) 43, 338, 417
BspLI GGNNCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 70, 89
BstHHI GCGC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 3 cut(s) 43, 338, 417
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 2 cut(s) 70, 89
BtsIMutI CAGTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 336, 337
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 280
CviJI RGCY 3 cut(s) 43, 338, 417
CviKI_1 RGCY 3 cut(s) 43, 338, 417
CviQI GTAC 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 1 cut(s) 283
FaiI YATR 7 cut(s) 49, 179, 215, 232, 263, 281, 350
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 57, 96
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 1 cut(s) 347
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 43, 338, 417
HhaI GCGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 148, 200, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 346
LpnPI CCDG 4 cut(s) 87, 150, 271, 294
LweI GCATC 3 cut(s) 135, 217, 279
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 77, 328
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 4 cut(s) 54, 198, 379, 384
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 3 cut(s) 168, 285, 357
MwoI GCNNNNNNNGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 202
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 338
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 336, 337
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 168, 285, 357
SatI GCNGC 1 cut(s) 41
Sau96I GGNCC 2 cut(s) 336, 337
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 340
SetI ASST 3 cut(s) 139, 240, 403
SfaNI GCATC 3 cut(s) 135, 217, 279
Sse9I AATT 2 cut(s) 77, 328
SsiI CCGC 2 cut(s) 40, 318
SspI AATATT 3 cut(s) 172, 296, 376
TaaI ACNGT 1 cut(s) 252
TasI AATT 2 cut(s) 77, 328
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 168, 285, 357
Tru9I TTAA 3 cut(s) 168, 285, 357
TscAI CASTG 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 257
XapI RAATTY 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.