Rroxscaffold_1G00014680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010610
Physical Location & Seq
Reverse (-)
18236100 .. 18237196
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014680.1

Sequence Viewer

Length: 483 bp
ATGGTGCATGACCTCTATAATGCTCGGGGATGTCGGACACTTGGTGAGATTCGAGGTCGTCATCCTTGCACGTCCAACGATCCCGGTGTTCTCGAGCTCCTCGAGGGAGTATCGTGTGGACTTCCCGTGGAAGTGGCTAGGGGTCGTATCGTGGAGTTCGGGGTAGGGGTGAGTGGCCCGCGGTACCGATGTAGAGGATGTCGAAATATTGGAGATAGCGCGTTCGTCCTACGGGCGATTGCTCATTGGCGATACGCCTATCAATCGGCCTGGTCCGAGTATGACGGAAGAGCAGATCACCGAGATGAGGACCACTTCGCGATTCCCGATAACGTCTTGTTGCGCCTACCGAGGGATGGTGAAACTTTTAGTCATCCCGAGTTGGGGTGGGCGTGCTTTTACGAGTATCAACTTAGGTGTGGCTTGACGTTCCCATTGCCGGAGGAATTACGATGTCGCTATCCTTCCCGAATATATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.35

Weight (kDa)

6.99

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 101
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AccII CGCG 3 cut(s) 181, 221, 320
AciI CCGC 2 cut(s) 179, 181
AclWI GGATC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 6 cut(s) 307, 352, 356, 383, 384, 439
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 4 cut(s) 24, 92, 101, 377
AoxI GGCC 2 cut(s) 175, 267
Asp718I GGTACC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 221, 345
AspS9I GGNCC 3 cut(s) 176, 273, 310
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 56, 181, 290, 371
AvaI CYCGRG 4 cut(s) 24, 92, 101, 377
AvaII GGWCC 2 cut(s) 273, 310
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 84, 271
Bme18I GGWCC 2 cut(s) 273, 310
BmeT110I CYCGRG 4 cut(s) 24, 92, 101, 377
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 176, 273, 310
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 2 cut(s) 84, 271
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 126, 179, 350
Bsc4I CCNNNNNNNGG 6 cut(s) 307, 352, 356, 383, 384, 439
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 3 cut(s) 126, 179, 350
BseGI GGATG 5 cut(s) 35, 61, 203, 361, 373
BseLI CCNNNNNNNGG 6 cut(s) 307, 352, 356, 383, 384, 439
BseMI GCAATG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 3 cut(s) 181, 221, 320
BshFI GGCC 2 cut(s) 177, 269
BshNI GGYRCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 4 cut(s) 24, 92, 101, 377
BsiSI CCGG 2 cut(s) 84, 440
BslI CCNNNNNNNGG 6 cut(s) 307, 352, 356, 383, 384, 439
BsnI GGCC 2 cut(s) 177, 269
BsoBI CYCGRG 4 cut(s) 24, 92, 101, 377
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 79, 295
Bsp68I TCGCGA 1 cut(s) 320
BspACI CCGC 2 cut(s) 179, 181
BspANI GGCC 2 cut(s) 177, 269
BspFNI CGCG 3 cut(s) 181, 221, 320
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 126, 179, 350
BssMI GATC 2 cut(s) 79, 295
Bst2UI CCWGG 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 179, 394
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 2 cut(s) 126, 179
BstF5I GGATG 5 cut(s) 35, 61, 203, 361, 373
BstFNI CGCG 3 cut(s) 181, 221, 320
BstHHI GCGC 2 cut(s) 221, 345
BstKTI GATC 2 cut(s) 82, 298
BstMBI GATC 2 cut(s) 79, 295
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 82, 269
BstUI CGCG 3 cut(s) 181, 221, 320
BsuRI GGCC 2 cut(s) 177, 269
BtgI CCRYGG 2 cut(s) 126, 179
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 5 cut(s) 35, 61, 203, 361, 373
BtuMI TCGCGA 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 179, 394
CfoI GCGC 2 cut(s) 221, 345
Cfr13I GGNCC 3 cut(s) 176, 273, 310
Cfr42I CCGCGG 1 cut(s) 182
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 97, 137, 177, 269, 423
CviKI_1 RGCY 5 cut(s) 97, 137, 177, 269, 423
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 413
DpnI GATC 2 cut(s) 81, 297
DpnII GATC 2 cut(s) 79, 295
DraIII CACNNNGTG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 273, 310
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 4 cut(s) 24, 92, 101, 377
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 18, 282, 475
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 186
FokI GGATG 5 cut(s) 42, 48, 210, 360, 368
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 1 cut(s) 138
GlaI GCGC 2 cut(s) 220, 344
HaeIII GGCC 2 cut(s) 177, 269
HapII CCGG 2 cut(s) 84, 440
HhaI GCGC 2 cut(s) 221, 345
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 2 cut(s) 219, 343
HinP1I GCGC 2 cut(s) 219, 343
HinfI GANTC 2 cut(s) 49, 322
HpaII CCGG 2 cut(s) 84, 440
HphI GGTGA 4 cut(s) 56, 181, 290, 371
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 36, 277
Hpy188III TCNNGA 5 cut(s) 92, 319, 326, 377, 468
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 474
HpyCH4IV ACGT 3 cut(s) 71, 333, 428
HpyCH4V TGCA 2 cut(s) 7, 69
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 3 cut(s) 71, 333, 428
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 2 cut(s) 219, 343
KpnI GGTACC 1 cut(s) 187
KspI CCGCGG 1 cut(s) 182
Kzo9I GATC 2 cut(s) 79, 295
LguI GCTCTTC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 4 cut(s) 97, 256, 283, 453
MaeI CTAG 1 cut(s) 138
MaeII ACGT 3 cut(s) 71, 333, 428
MalI GATC 2 cut(s) 81, 297
MboI GATC 2 cut(s) 79, 295
MboII GAAGA 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 14, 99
MnlI CCTC 8 cut(s) 23, 47, 97, 110, 188, 301, 345, 436
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 84, 440
MspR9I CCNGG 2 cut(s) 84, 271
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 3 cut(s) 181, 221, 320
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 79, 295
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 185
NruI TCGCGA 1 cut(s) 320
PaeR7I CTCGAG 2 cut(s) 92, 101
PciSI GCTCTTC 1 cut(s) 283
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 324
PfeI GAWTC 2 cut(s) 49, 322
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 3 cut(s) 176, 273, 310
PspXI VCTCGAGB 1 cut(s) 101
RruI TCGCGA 1 cut(s) 320
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 99
SacII CCGCGG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 79, 295
Sau96I GGNCC 3 cut(s) 176, 273, 310
ScrFI CCNGG 2 cut(s) 84, 271
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 15, 58, 74, 99, 336, 419, 431
Sfr274I CTCGAG 2 cut(s) 92, 101
Sfr303I CCGCGG 1 cut(s) 182
SgrBI CCGCGG 1 cut(s) 182
SinI GGWCC 2 cut(s) 273, 310
SlaI CTCGAG 2 cut(s) 92, 101
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 92, 101
SmoI CTYRAG 2 cut(s) 92, 101
Sse9I AATT 1 cut(s) 446
SsiI CCGC 2 cut(s) 179, 181
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 82, 269
TaiI ACGT 3 cut(s) 74, 336, 431
TaqI TCGA 4 cut(s) 52, 93, 102, 202
TasI AATT 1 cut(s) 446
TfiI GAWTC 2 cut(s) 49, 322
TspGWI ACGGA 1 cut(s) 300
VpaK11BI GGWCC 2 cut(s) 273, 310
XhoI CTCGAG 2 cut(s) 92, 101
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.