RchiOBHm_Chr1g0322801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010610
Physical Location & Seq
Reverse (-)
10225766 .. 10226899
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55277

Sequence Viewer

Length: 1134 bp
ATGGCACGGGATCCTCGTGGTCGCAGTAGGCGAGAAGGTTCGTCGCGGCGTGGTGGAGGTGAGACTGTTTCTCGTGGGGGTGGTGAAGGTGTTCCTCGCAGTGGTGGTGGTGGTGCATCTCACGGGAGCGGTAGGGGCGCGTCTCGTGGAAGTGGTGGAGGCGAGTCTCGCGGGAGTTGTGGAGGCGCGTCTTGCGGAAGTGGCAATGTTGTGGCTCACGGAGGTGGTGAAGGTGTTTCTCATAGACTTGTCGGGAGTGCCTCTGAAGGTGGTGGAGTTGTACTACACGGGGGTGGCGAAGGCTCGTCTCACAGTGAGGGGTCTTCTCATGGGGCCTCGAGTAGGGTTGAGTATCCTAGGAGAGATATGGGGCCCAAGGTTCCCAAGGAGGAAGATGTCGAGGTGTTAGAAATTCCTCATTCACCGCATGGGCGATTGCTCCTTGGCGATACCTCCATTGATCAACTGGGTCCGAGTATGACAGAAATGCAGATTGCTGATATGAGGGCGGCCTGGGGTATTCCAGACCACGTGTGGTTGCGCCCTTTGAGGGGAGATGAACACTTTAGTCATCCCGAGATTGGGTGGGCGTGTTTTTATGAGTATCAGCTCAAGTGTGGGTTGTCGTTTCCGATACCGGAGGAACTGCAGTATTTGCTATCGTGTCTTAATATCGCCGTGGGGCAGCTGTCGCCGAATGCATTGAGGCAATTGATGGGGCTTTTGTTGCTGTGGATGCTTTGTAGGCAACAGTGTCCCAGCATCAATGAGTTTAATTCCTTGTTCAAGATGCAGTACTCCACAAAGGTTGGGGATGGTGGGTGTGTGAATTTCCAAGCGCGTGGCCGCATGGTTATTGAGGACTTGCCGTCTAACATTTATGGTCGGTGGAGGGGTAGGCCTTGCTTGGTTGGAGGTCGTTGGCAGAATCCGGACATGATGCATCAGGTCCCGACTCGTTTCCAGCCTATCAATGAGTATCGTGATTGCGTTTTTAGTGCATTTTGCAATTGGTGTGTGCTAACACCGTCTCTTTGTATCTTAGTGAGGCAGGAGACTGCTTTGACCACGCTAAAGCAGAAACACGTTGTGAGAGTTATGGGCGCGTTAAAGGGGCTTTTATCGTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

377

Amino Acids

40.6

Weight (kDa)

8.57

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
AccIII TCCGGA 1 cut(s) 931
AciI CCGC 7 cut(s) 46, 129, 171, 195, 425, 509, 847
AclWI GGATC 2 cut(s) 5, 18
AcoI YGGCCR 1 cut(s) 844
AcsI RAATTY 2 cut(s) 411, 829
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 532
AdeI CACNNNGTG 1 cut(s) 1090
AfaI GTAC 2 cut(s) 282, 797
AfiI CCNNNNNNNGG 6 cut(s) 101, 342, 550, 551, 581, 582
AflIII ACRYGT 2 cut(s) 531, 1084
AgsI TTSAA 1 cut(s) 787
AhdI GACNNNNNGTC 1 cut(s) 868
AjnI CCWGG 1 cut(s) 512
AleI CACNNNNGTG 2 cut(s) 222, 291
AluBI AGCT 2 cut(s) 610, 688
AluI AGCT 2 cut(s) 610, 688
Alw26I GTCTC 6 cut(s) 56, 147, 171, 312, 1035, 1049
AlwI GGATC 2 cut(s) 5, 18
Ama87I CYCGRG 2 cut(s) 337, 575
Aor13HI TCCGGA 1 cut(s) 931
AoxI GGCC 5 cut(s) 333, 371, 510, 844, 899
ApaI GGGCCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 685
ApoI RAATTY 2 cut(s) 411, 829
Asp700I GAANNNNTTC 1 cut(s) 90
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 5 cut(s) 140, 188, 543, 841, 1106
AspS9I GGNCC 5 cut(s) 333, 371, 372, 470, 949
AsuHPI GGTGA 4 cut(s) 71, 95, 239, 414
AvaI CYCGRG 2 cut(s) 337, 575
AvaII GGWCC 2 cut(s) 470, 949
AvrII CCTAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 375
BamHI GGATCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 3 cut(s) 15, 72, 144
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 697
BccI CCATC 2 cut(s) 709, 809
BceAI ACGGC 2 cut(s) 662, 853
BciT130I CCWGG 1 cut(s) 514
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 6 cut(s) 56, 147, 171, 312, 1035, 1049
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 647
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 4 cut(s) 47, 510, 686, 847
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 4 cut(s) 48, 511, 687, 848
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 1 cut(s) 514
Bme18I GGWCC 2 cut(s) 470, 949
BmeRI GACNNNNNGTC 1 cut(s) 868
BmeT110I CYCGRG 2 cut(s) 337, 575
BmgT120I GGNCC 5 cut(s) 333, 371, 372, 470, 949
BmiI GGNNCC 7 cut(s) 12, 334, 372, 373, 381, 471, 951
BmrFI CCNGG 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 6 cut(s) 125, 726, 771, 780, 930, 952
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 532
BsaJI CCNNGG 6 cut(s) 356, 375, 384, 442, 513, 678
BsaWI WCCGGW 2 cut(s) 637, 931
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 342, 550, 551, 581, 582
Bse1I ACTGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 931
BseBI CCWGG 1 cut(s) 514
BseDI CCNNGG 6 cut(s) 356, 375, 384, 442, 513, 678
BseGI GGATG 3 cut(s) 571, 741, 820
BseLI CCNNNNNNNGG 6 cut(s) 101, 342, 550, 551, 581, 582
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 758
Bsh1236I CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
BshFI GGCC 5 cut(s) 335, 373, 512, 846, 901
BsiHKCI CYCGRG 2 cut(s) 337, 575
BsiSI CCGG 2 cut(s) 638, 932
BslFI GGGAC 2 cut(s) 741, 935
BslI CCNNNNNNNGG 6 cut(s) 101, 342, 550, 551, 581, 582
BsmAI GTCTC 6 cut(s) 56, 147, 171, 312, 1035, 1049
BsmBI CGTCTC 3 cut(s) 147, 312, 1035
BsmFI GGGAC 2 cut(s) 741, 935
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 5 cut(s) 335, 373, 512, 846, 901
BsoBI CYCGRG 2 cut(s) 337, 575
Bsp120I GGGCCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 375
Bsp13I TCCGGA 1 cut(s) 931
Bsp143I GATC 2 cut(s) 10, 460
BspACI CCGC 7 cut(s) 46, 129, 171, 195, 425, 509, 847
BspANI GGCC 5 cut(s) 335, 373, 512, 846, 901
BspEI TCCGGA 1 cut(s) 931
BspFNI CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
BspLI GGNNCC 7 cut(s) 12, 334, 372, 373, 381, 471, 951
BspMAI CTGCAG 1 cut(s) 651
BspPI GGATC 2 cut(s) 5, 18
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 471
BssECI CCNNGG 6 cut(s) 356, 375, 384, 442, 513, 678
BssMI GATC 2 cut(s) 10, 460
BssSI CACGAG 3 cut(s) 15, 72, 144
BssT1I CCWWGG 4 cut(s) 356, 375, 384, 442
Bst2BI CACGAG 3 cut(s) 15, 72, 144
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 4 cut(s) 67, 314, 753, 1029
BstAPI GCANNNNNTGC 1 cut(s) 655
BstBAI YACGTR 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 1042
BstDSI CCRYGG 1 cut(s) 678
BstENI CCTNNNNNAGG 1 cut(s) 340
BstF5I GGATG 3 cut(s) 571, 741, 820
BstFNI CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
BstHHI GCGC 5 cut(s) 140, 188, 543, 841, 1106
BstKTI GATC 2 cut(s) 13, 463
BstMAI GTCTC 6 cut(s) 56, 147, 171, 312, 1035, 1049
BstMBI GATC 2 cut(s) 10, 460
BstMWI GCNNNNNNNGC 9 cut(s) 135, 168, 192, 201, 655, 691, 727, 736, 745
BstNI CCWGG 1 cut(s) 514
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 647
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 5 cut(s) 335, 373, 512, 846, 901
BtgI CCRYGG 1 cut(s) 678
BtsCI GGATG 3 cut(s) 571, 741, 820
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 319, 758
CfoI GCGC 5 cut(s) 140, 188, 543, 841, 1106
Cfr13I GGNCC 5 cut(s) 333, 371, 372, 470, 949
CseI GACGC 2 cut(s) 129, 177
Csp6I GTAC 2 cut(s) 281, 796
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 4 cut(s) 329, 428, 850, 937
CviQI GTAC 2 cut(s) 281, 796
DdeI CTNAG 1 cut(s) 1042
DpnI GATC 2 cut(s) 12, 462
DpnII GATC 2 cut(s) 10, 460
DraIII CACNNNGTG 1 cut(s) 1090
DriI GACNNNNNGTC 1 cut(s) 868
EaeI YGGCCR 1 cut(s) 844
Eam1105I GACNNNNNGTC 1 cut(s) 868
Eco130I CCWWGG 4 cut(s) 356, 375, 384, 442
Eco147I AGGCCT 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 470, 949
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 532
Eco88I CYCGRG 2 cut(s) 337, 575
EcoNI CCTNNNNNAGG 1 cut(s) 340
EcoO109I RGGNCCY 3 cut(s) 333, 371, 949
EcoRII CCWGG 1 cut(s) 512
EcoT14I CCWWGG 4 cut(s) 356, 375, 384, 442
EcoT22I ATGCAT 2 cut(s) 703, 945
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 4 cut(s) 356, 375, 384, 442
Esp3I CGTCTC 3 cut(s) 147, 312, 1035
FaeI CATG 4 cut(s) 332, 431, 853, 940
FaqI GGGAC 2 cut(s) 741, 935
FatI CATG 4 cut(s) 328, 427, 849, 936
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 47, 510, 686, 847
FokI GGATG 3 cut(s) 558, 748, 827
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 4 cut(s) 47, 510, 686, 847
FspBI CTAG 1 cut(s) 357
GlaI GCGC 5 cut(s) 139, 187, 542, 840, 1105
GluI GCNGC 4 cut(s) 47, 510, 686, 847
GsaI CCCAGC 1 cut(s) 762
HaeIII GGCC 5 cut(s) 335, 373, 512, 846, 901
HapII CCGG 2 cut(s) 638, 932
HgaI GACGC 2 cut(s) 129, 177
HhaI GCGC 5 cut(s) 140, 188, 543, 841, 1106
Hin1II CATG 4 cut(s) 332, 431, 853, 940
Hin6I GCGC 5 cut(s) 138, 186, 541, 839, 1104
HinP1I GCGC 5 cut(s) 138, 186, 541, 839, 1104
HinfI GANTC 3 cut(s) 164, 928, 955
HpaII CCGG 2 cut(s) 638, 932
HphI GGTGA 4 cut(s) 71, 95, 239, 414
Hpy188I TCNGA 3 cut(s) 265, 474, 633
Hpy188III TCNNGA 7 cut(s) 253, 524, 575, 787, 932, 952, 983
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 5 cut(s) 29, 80, 224, 260, 293
HpyCH4III ACNGT 4 cut(s) 67, 314, 753, 1029
HpyCH4IV ACGT 2 cut(s) 531, 1086
HpyCH4V TGCA 8 cut(s) 116, 490, 649, 701, 793, 943, 1001, 1008
HpyF10VI GCNNNNNNNGC 9 cut(s) 135, 168, 192, 201, 655, 691, 727, 736, 745
HpyF3I CTNAG 1 cut(s) 1042
HpySE526I ACGT 2 cut(s) 531, 1086
Hsp92II CATG 4 cut(s) 332, 431, 853, 940
HspAI GCGC 5 cut(s) 138, 186, 541, 839, 1104
Kpn2I TCCGGA 1 cut(s) 931
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 2 cut(s) 10, 460
LmnI GCTCC 2 cut(s) 126, 444
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 6 cut(s) 125, 726, 771, 780, 930, 952
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 531, 1086
MalI GATC 2 cut(s) 12, 462
MbiI CCGCTC 1 cut(s) 129
MboI GATC 2 cut(s) 10, 460
MboII GAAGA 2 cut(s) 315, 404
MfeI CAATTG 2 cut(s) 710, 1009
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 5 cut(s) 411, 710, 775, 829, 1009
MlyI GAGTC 2 cut(s) 173, 949
MmeI TCCRAC 1 cut(s) 892
Mph1103I ATGCAT 2 cut(s) 703, 945
MroI TCCGGA 1 cut(s) 931
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 3 cut(s) 669, 774, 1109
MslI CAYNNNNRTG 2 cut(s) 222, 291
MspA1I CMGCKG 1 cut(s) 688
MspI CCGG 2 cut(s) 638, 932
MspR9I CCNGG 1 cut(s) 514
MunI CAATTG 2 cut(s) 710, 1009
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 514
MvnI CGCG 6 cut(s) 46, 140, 171, 188, 841, 1106
MwoI GCNNNNNNNGC 9 cut(s) 135, 168, 192, 201, 655, 691, 727, 736, 745
NdeII GATC 2 cut(s) 10, 460
NlaIII CATG 4 cut(s) 332, 431, 853, 940
NlaIV GGNNCC 7 cut(s) 12, 334, 372, 373, 381, 471, 951
NsiI ATGCAT 2 cut(s) 703, 945
OliI CACNNNNGTG 2 cut(s) 222, 291
PaeR7I CTCGAG 1 cut(s) 337
PceI AGGCCT 1 cut(s) 901
PcsI WCGNNNNNNNCGW 3 cut(s) 13, 28, 294
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 928
PkrI GCNGC 4 cut(s) 48, 511, 687, 848
PleI GAGTC 2 cut(s) 172, 949
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 2 cut(s) 172, 949
Ppu21I YACGTR 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 949
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 1 cut(s) 512
PspCI CACGTG 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 7 cut(s) 12, 334, 372, 373, 381, 471, 951
PspOMI GGGCCC 1 cut(s) 371
PspPI GGNCC 5 cut(s) 333, 371, 372, 470, 949
PspPPI RGGWCCY 1 cut(s) 949
PspXI VCTCGAGB 1 cut(s) 337
PstI CTGCAG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 2 cut(s) 282, 797
RsaNI GTAC 2 cut(s) 281, 796
RseI CAYNNNNRTG 2 cut(s) 222, 291
SaqAI TTAA 3 cut(s) 669, 774, 1109
SatI GCNGC 4 cut(s) 47, 510, 686, 847
Sau3AI GATC 2 cut(s) 10, 460
Sau96I GGNCC 5 cut(s) 333, 371, 372, 470, 949
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 2 cut(s) 173, 949
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 6 cut(s) 125, 726, 771, 780, 930, 952
SfcI CTRYAG 1 cut(s) 647
Sfr274I CTCGAG 1 cut(s) 337
SinI GGWCC 2 cut(s) 470, 949
SlaI CTCGAG 1 cut(s) 337
SmiMI CAYNNNNRTG 2 cut(s) 222, 291
SmlI CTYRAG 2 cut(s) 337, 611
SmoI CTYRAG 2 cut(s) 337, 611
Sse9I AATT 5 cut(s) 411, 710, 775, 829, 1009
SseBI AGGCCT 1 cut(s) 901
SsiI CCGC 7 cut(s) 46, 129, 171, 195, 425, 509, 847
SspMI CTAG 1 cut(s) 357
StuI AGGCCT 1 cut(s) 901
StyD4I CCNGG 1 cut(s) 512
StyI CCWWGG 4 cut(s) 356, 375, 384, 442
TaaI ACNGT 4 cut(s) 67, 314, 753, 1029
TaiI ACGT 2 cut(s) 534, 1089
TaqI TCGA 2 cut(s) 338, 399
TasI AATT 5 cut(s) 411, 710, 775, 829, 1009
TatI WGTACW 2 cut(s) 280, 795
TauI GCSGC 3 cut(s) 49, 512, 849
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 3 cut(s) 669, 774, 1109
Tru9I TTAA 3 cut(s) 669, 774, 1109
TscAI CASTG 3 cut(s) 106, 319, 758
TseI GCWGC 1 cut(s) 685
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 106, 319, 758
VpaK11BI GGWCC 2 cut(s) 470, 949
XagI CCTNNNNNAGG 1 cut(s) 340
XapI RAATTY 2 cut(s) 411, 829
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 531
XhoI CTCGAG 1 cut(s) 337
XmaJI CCTAGG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 797
Zsp2I ATGCAT 2 cut(s) 703, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.