Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Reverse (-)

72412411 .. 72413314

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGGTGCCCTTGAGGAATCAATTACAGCCTAGAAAATTTGGTGGAGTTCTCTGGTACTGCATGATCATATATGCCTTAAAGACTTTGTTACTTCAGTTTGGTGAAGATATGATTCCCACAGCACCATCTCTTTTTAGGATTCCAAAATTGAACCTGCAGCGGAATAACGTTCGTGCTGTGAGTAAAGGGGGCATTCCTCAGTGGACTCCCAAGTACAATAGTAGTATTTTGGAAGACATGTTTATAGAAGATACAGAACAACTTGTCAAGCAAACTTTTCTTGGGTCAAAGGAATTACGAGAAGGTTTAGTTTTGCTGAAGGTCTGGGCTCGCCGCAGGATACCAATTTATGCTTATGATTGCTTGAATGGTTTTTTAATCTCTGTCATATTGGCATATCTTGTGGATAGGAACCATATCAATAAATCAATGAAGGCAATGCAAATATTTCGTGTTACAATGAAATTCATTGGTATGTTTTCTTTCCCCTTTTACACCAAGCACTTGTTTGAAGTCATCAAACCCAGTTGGCGACTAGATTTATCTTGCATGCTTCTACTTGGACATAATTGCATTTTATATGCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

197

Amino Acids

23.1

Weight (kDa)

9.67

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nrap	PF03813	38 - 93	6.3e-07	Nrap protein domain 1
Nrap_D2	PF17403	100 - 162	5.2e-11	Nrap protein PAP/OAS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	2 cut(s)	163, 337
AclI	AACGTT	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	38, 467
AcuI	CTGAAG	2 cut(s)	80, 341
AfaI	GTAC	2 cut(s)	59, 218
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	154, 370, 515
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	38, 467
AsuHPI	GGTGA	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciVI	GTATCC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	2 cut(s)	33, 539
BfmI	CTRYAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	161, 337
BlsI	GCNGC	2 cut(s)	162, 338
BmiI	GGNNCC	2 cut(s)	9, 416
BmrI	ACTGGG	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	12, 334
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	163, 337
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	9, 416
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	528
BssMI	GATC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	334, 554
BstDEI	CTNAG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstNSI	RCATGY	2 cut(s)	244, 556
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	334, 554
Csp6I	GTAC	2 cut(s)	58, 217
CviAII	CATG	3 cut(s)	64, 241, 553
CviJI	RGCY	2 cut(s)	31, 332
CviKI_1	RGCY	2 cut(s)	31, 332
CviQI	GTAC	2 cut(s)	58, 217
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	80, 341
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	3 cut(s)	67, 244, 556
FatI	CATG	3 cut(s)	63, 240, 552
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	161, 337
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	161, 337
FspBI	CTAG	2 cut(s)	33, 539
GluI	GCNGC	2 cut(s)	161, 337
Hin1II	CATG	3 cut(s)	67, 244, 556
HinfI	GANTC	4 cut(s)	19, 115, 142, 208
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	3 cut(s)	299, 316, 430
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	63, 160, 445, 552, 576
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	67, 244, 556
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	5 cut(s)	40, 170, 313, 325, 541
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	33, 539
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	90, 457
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	3 cut(s)	119, 248, 263
MhlI	GDGCHC	2 cut(s)	12, 334
MluCI	AATT	7 cut(s)	23, 38, 149, 296, 348, 467, 571
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	2 cut(s)	9, 210
MseI	TTAA	2 cut(s)	80, 380
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	195
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	3 cut(s)	67, 244, 556
NlaIV	GGNNCC	2 cut(s)	9, 416
NspI	RCATGY	2 cut(s)	244, 556
PaeI	GCATGC	1 cut(s)	556
PciI	ACATGT	1 cut(s)	240
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	19, 115, 142
PkrI	GCNGC	2 cut(s)	162, 338
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	9, 416
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	59, 218
RsaNI	GTAC	2 cut(s)	58, 217
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	80, 380
SatI	GCNGC	2 cut(s)	161, 337
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	12, 334
SetI	ASST	5 cut(s)	9, 159, 174, 310, 327
SfcI	CTRYAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	7 cut(s)	23, 38, 149, 296, 348, 467, 571
SsiI	CCGC	2 cut(s)	163, 337
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	2 cut(s)	33, 539
TaiI	ACGT	1 cut(s)	174
TasI	AATT	7 cut(s)	23, 38, 149, 296, 348, 467, 571
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	19, 115, 142
Tru1I	TTAA	2 cut(s)	80, 380
Tru9I	TTAA	2 cut(s)	80, 380
TscAI	CASTG	1 cut(s)	209
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	449, 460, 479
TspRI	CASTG	1 cut(s)	209
XapI	RAATTY	2 cut(s)	38, 467
XceI	RCATGY	2 cut(s)	244, 556
XspI	CTAG	2 cut(s)	33, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.