Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Reverse (-)

55519860 .. 55520324

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCATGGGAGTATCGTGGTAGCGGTAGGCGAGAGGTCGGGCCTCGTGGAGGTGGCGAGAGTGTTTCTCGTGGCGGGTGTGGAGGGTGTTCCCCCGCGGCGTGTGATGGTGCTTCTCGCACTTCCCGAGGTGGTGGTAAGGGTGTTTCCGGAGGAAGTGGTGAGGGGTGCGCTCGCGGGGCCGTGGGCACTTCCCGAGGTGGTGGCAAGGGTGCGTCTCGCGGAGTTTCTAGTAGGGTTGAGCACATTGCGGGTTCCGATGTTCTCGAGGTGGAGAATGTTGAGGTGTTGGAGATTCCTTACTCGCCATGTGGGCGGTTTCTCCTTGGCGAGATGCCCATTGAACGGGCGGGTCCGAGTGTGACGAGAGGGGCGGATCGCCGAAATAAGGACGACTGGGGCATTCCGAGCAATGTATTGCTACGCCCTCGAGGGATAGTGAATGTTTTAGCCACCCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

15.67

Weight (kDa)

9.49

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	429
AccII	CGCG	3 cut(s)	98, 177, 222
AccIII	TCCGGA	1 cut(s)	149
AclWI	GGATC	1 cut(s)	384
AfiI	CCNNNNNNNGG	4 cut(s)	50, 345, 388, 459
AgsI	TTSAA	1 cut(s)	344
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	2 cut(s)	41, 180
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	41, 180, 353
AsuHPI	GGTGA	1 cut(s)	173
AvaI	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	191
BauI	CACGAG	2 cut(s)	45, 69
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
BmgT120I	GGNCC	3 cut(s)	41, 180, 353
BmiI	GGNNCC	3 cut(s)	181, 256, 354
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BsaJI	CCNNGG	6 cut(s)	96, 127, 183, 196, 325, 458
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 345, 388, 459
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	2 cut(s)	246, 418
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	6 cut(s)	96, 127, 183, 196, 325, 458
BseLI	CCNNNNNNNGG	4 cut(s)	50, 345, 388, 459
BseMI	GCAATG	2 cut(s)	246, 418
BseNI	ACTGG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	191
Bsh1236I	CGCG	3 cut(s)	98, 177, 222
BshFI	GGCC	2 cut(s)	43, 182
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	50, 345, 388, 459
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	43, 182
BsoBI	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
Bsp1286I	GDGCHC	2 cut(s)	191, 246
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	43, 182
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	3 cut(s)	98, 177, 222
BspLI	GGNNCC	3 cut(s)	181, 256, 354
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	246, 418
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	6 cut(s)	96, 127, 183, 196, 325, 458
BssMI	GATC	1 cut(s)	376
BssSI	CACGAG	2 cut(s)	45, 69
BssT1I	CCWWGG	1 cut(s)	325
Bst2BI	CACGAG	2 cut(s)	45, 69
BstC8I	GCNNGC	1 cut(s)	175
BstDSI	CCRYGG	2 cut(s)	96, 183
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstFNI	CGCG	3 cut(s)	98, 177, 222
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 313, 408
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	3 cut(s)	98, 177, 222
BsuRI	GGCC	2 cut(s)	43, 182
BtgI	CCRYGG	2 cut(s)	96, 183
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	41, 180, 353
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	204
CviAII	CATG	2 cut(s)	6, 309
CviJI	RGCY	3 cut(s)	43, 182, 452
CviKI_1	RGCY	3 cut(s)	43, 182, 452
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	353
Eco88I	CYCGRG	5 cut(s)	126, 195, 266, 429, 457
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	9, 312
FaiI	YATR	2 cut(s)	7, 310
FatI	CATG	2 cut(s)	5, 308
FauI	CCCGC	5 cut(s)	68, 103, 170, 244, 343
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	43, 182
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	9, 312
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	259, 357, 408
Hpy188III	TCNNGA	4 cut(s)	126, 150, 195, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 313, 408
Hsp92II	CATG	2 cut(s)	9, 312
HspAI	GCGC	1 cut(s)	171
Kpn2I	TCCGGA	1 cut(s)	149
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	376
LpnPI	CCDG	2 cut(s)	163, 382
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	191, 246
MmeI	TCCRAC	1 cut(s)	270
MroI	TCCGGA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	3 cut(s)	98, 177, 222
MwoI	GCNNNNNNNGC	3 cut(s)	179, 313, 408
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	9, 312
NlaIV	GGNNCC	3 cut(s)	181, 256, 354
NmuCI	GTSAC	1 cut(s)	361
PaeR7I	CTCGAG	2 cut(s)	266, 429
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	181, 256, 354
PspPI	GGNCC	3 cut(s)	41, 180, 353
PspXI	VCTCGAGB	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	99
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	3 cut(s)	41, 180, 353
SduI	GDGCHC	2 cut(s)	191, 246
SetI	ASST	7 cut(s)	39, 55, 133, 202, 273, 288, 464
SfaNI	GCATC	1 cut(s)	324
Sfr274I	CTCGAG	2 cut(s)	266, 429
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	353
SlaI	CTCGAG	2 cut(s)	266, 429
SmlI	CTYRAG	2 cut(s)	266, 429
SmoI	CTYRAG	2 cut(s)	266, 429
SspMI	CTAG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	2 cut(s)	267, 430
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	48
XhoI	CTCGAG	2 cut(s)	266, 429
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.