Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Reverse (-)

257666 .. 258133

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACGGATGAGCATATCGCCGAAATGAGGGCAACCCGGGGTATTCGGGGCGATGTGTTGTTACGGTTGTTGAGAGGCGGTAAGAGCTTTAGTCACCCCGAGGTGGGGTGGGCGTATTTTTATGAGTTTCGGCTCGAGTGTGGGTTGATGTTCCCGATACCGGAGGATTTACGTGCACTCGGCCGCGCCATTATAGAGACCTTCCATCAAACATTTTTGCTAGGCGGAAGGGTAGGCCTAGCCCGGTTGGGGGTTCGGCGAGAATCCGGACATGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.48

Weight (kDa)

9.18

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	3 cut(s)	78, 184, 225
AcoI	YGGCCR	1 cut(s)	181
AfiI	CCNNNNNNNGG	7 cut(s)	27, 103, 104, 105, 160, 249, 250
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	174
Ama87I	CYCGRG	3 cut(s)	36, 98, 134
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	2 cut(s)	181, 235
ApaLI	GTGCAC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	188
AsuC2I	CCSGG	3 cut(s)	37, 38, 244
AsuHPI	GGTGA	1 cut(s)	86
AvaI	CYCGRG	3 cut(s)	36, 98, 134
BaeGI	GKGCMC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BccI	CCATC	1 cut(s)	213
BcnI	CCSGG	3 cut(s)	37, 38, 244
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	221, 239
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	37, 38, 244
BmeT110I	CYCGRG	3 cut(s)	36, 98, 134
BmrFI	CCNGG	3 cut(s)	37, 38, 244
BpuMI	CCSGG	3 cut(s)	37, 38, 244
BsaAI	YACGTR	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	36, 37, 99
BsaWI	WCCGGW	2 cut(s)	160, 266
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 103, 104, 105, 160, 249, 250
BseAI	TCCGGA	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	36, 37, 99
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	7 cut(s)	27, 103, 104, 105, 160, 249, 250
BseSI	GKGCMC	1 cut(s)	178
BseX3I	CGGCCG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	183, 237
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	3 cut(s)	36, 98, 134
BsiSI	CCGG	4 cut(s)	37, 161, 244, 267
BslI	CCNNNNNNNGG	7 cut(s)	27, 103, 104, 105, 160, 249, 250
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	183, 237
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	3 cut(s)	36, 98, 134
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	266
BspACI	CCGC	3 cut(s)	78, 184, 225
BspANI	GGCC	2 cut(s)	183, 237
BspEI	TCCGGA	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	36, 37, 99
Bst4CI	ACNGT	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	191
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstSCI	CCNGG	3 cut(s)	35, 36, 242
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	183, 237
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	188
Cfr9I	CCCGGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	5 cut(s)	87, 133, 183, 237, 242
CviKI_1	RGCY	5 cut(s)	87, 133, 183, 237, 242
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	191
Eco52I	CGGCCG	1 cut(s)	181
Eco88I	CYCGRG	3 cut(s)	36, 98, 134
FaeI	CATG	1 cut(s)	275
FaiI	YATR	5 cut(s)	15, 123, 194, 273, 280
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	2 cut(s)	221, 239
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	183, 237
HapII	CCGG	4 cut(s)	37, 161, 244, 267
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	4 cut(s)	37, 161, 244, 267
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	154, 267
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	211, 222
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	176, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	186
Kpn2I	TCCGGA	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	50, 174, 257
MaeI	CTAG	2 cut(s)	221, 239
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	60, 92
MhlI	GDGCHC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	21, 68, 94, 157
MroI	TCCGGA	1 cut(s)	266
MspI	CCGG	4 cut(s)	37, 161, 244, 267
MspR9I	CCNGG	3 cut(s)	37, 38, 244
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	3 cut(s)	37, 38, 244
NlaIII	CATG	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	134
SatI	GCNGC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	37, 38, 244
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	89, 105, 175, 203
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	78, 184, 225
SspMI	CTAG	2 cut(s)	221, 239
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	35, 36, 242
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	135
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	20
TspMI	CCCGGG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	174
XhoI	CTCGAG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	36
XspI	CTAG	2 cut(s)	221, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.