Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Forward (+)

41574858 .. 41575530

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGTGGGAGAATCGCGGTCGCGGTAAGCGAGAGGGTTCCTCTCACGCAGGGGAAAGAGCCTCTCGTGGCCGCGTCGGTGCTTCTCGTGGTGAAGGAGAGGGCGGGTCTCGCAGTTACGGTGAAGGTGTTTCCCCGTGGGTGGTTTCCGAGGAAGTGGCAAGGGCTCTTCCCGAGGAGGTGGTAGGGAGTTCCTCGTGGCGATATCGCGAGGATCTCCCCGGGAGGCGGCGAGGGTATTTCCCGAGGAAGTGGCAAGGATTCGTCTCGTGGAATTCCGACCACCCCAAGGTGGGGTGGGCATGCTTTTACGAATATCGGCTCAAGTGTGGGTTGACGTTTCCGATACCGGAAGAGCTGCAAGATTCGTTGTCCCCGCTTGAATATATCGGTAAGGCGCCTATAGCCCAATGCATTGAGGCAAATAATGGGAGTGTTGCTGCTATGGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.77

Weight (kDa)

7.72

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AccII	CGCG	4 cut(s)	18, 24, 75, 210
AciI	CCGC	6 cut(s)	18, 24, 73, 105, 229, 377
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	142, 228, 289, 292, 293, 294
AgsI	TTSAA	1 cut(s)	383
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	114, 271
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	3 cut(s)	173, 221, 244
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	358, 440
ApoI	RAATTY	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	400
AsuC2I	CCSGG	2 cut(s)	222, 223
AsuHPI	GGTGA	2 cut(s)	104, 134
AvaI	CYCGRG	3 cut(s)	173, 221, 244
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	4 cut(s)	66, 87, 196, 268
BbvI	GCAGC	2 cut(s)	345, 427
BcnI	CCSGG	2 cut(s)	222, 223
BcoDI	GTCTC	2 cut(s)	114, 271
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	401
BisI	GCNGC	4 cut(s)	73, 230, 359, 441
BlsI	GCNGC	4 cut(s)	74, 231, 360, 442
Bme1390I	CCNGG	2 cut(s)	222, 223
BmeT110I	CYCGRG	3 cut(s)	173, 221, 244
BmiI	GGNNCC	2 cut(s)	40, 399
BmrFI	CCNGG	2 cut(s)	222, 223
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	222, 223
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	7 cut(s)	137, 150, 174, 220, 221, 245, 288
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 228, 289, 292, 293, 294
BseDI	CCNNGG	7 cut(s)	137, 150, 174, 220, 221, 245, 288
BseLI	CCNNNNNNNGG	6 cut(s)	142, 228, 289, 292, 293, 294
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	345, 427
Bsh1236I	CGCG	4 cut(s)	18, 24, 75, 210
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	22
BsiHKCI	CYCGRG	3 cut(s)	173, 221, 244
BsiSI	CCGG	2 cut(s)	222, 350
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	6 cut(s)	142, 228, 289, 292, 293, 294
BsmAI	GTCTC	2 cut(s)	114, 271
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	3 cut(s)	173, 221, 244
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	214
Bsp68I	TCGCGA	1 cut(s)	210
BspACI	CCGC	6 cut(s)	18, 24, 73, 105, 229, 377
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	4 cut(s)	18, 24, 75, 210
BspLI	GGNNCC	2 cut(s)	40, 399
BspPI	GGATC	1 cut(s)	222
BspQI	GCTCTTC	2 cut(s)	174, 348
BspT107I	GGYRCC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	114
BssECI	CCNNGG	7 cut(s)	137, 150, 174, 220, 221, 245, 288
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	398
BssSI	CACGAG	4 cut(s)	66, 87, 196, 268
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	4 cut(s)	66, 87, 196, 268
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	174, 348
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	137
BstFNI	CGCG	4 cut(s)	18, 24, 75, 210
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	114, 271
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 404
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	220, 221
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	4 cut(s)	18, 24, 75, 210
BstV1I	GCAGC	2 cut(s)	345, 427
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	137
BtuMI	TCGCGA	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	400
Cfr9I	CCCGGG	1 cut(s)	221
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	6 cut(s)	62, 72, 167, 322, 358, 407
CviKI_1	RGCY	6 cut(s)	62, 72, 167, 322, 358, 407
DdeI	CTNAG	1 cut(s)	453
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	174, 348
EarI	CTCTTC	2 cut(s)	174, 348
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	206
Eco88I	CYCGRG	3 cut(s)	173, 221, 244
EcoRI	GAATTC	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	169
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	1 cut(s)	306
FaiI	YATR	4 cut(s)	304, 387, 404, 446
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	302
FauI	CCCGC	2 cut(s)	98, 384
Fnu4HI	GCNGC	4 cut(s)	73, 230, 359, 441
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	73, 230, 359, 441
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	4 cut(s)	73, 230, 359, 441
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	222, 350
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	306
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	13, 261, 365
HpaII	CCGG	2 cut(s)	222, 350
HphI	GGTGA	2 cut(s)	104, 134
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	3 cut(s)	151, 280, 345
Hpy188III	TCNNGA	3 cut(s)	173, 209, 244
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	89, 119
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	2 cut(s)	361, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 404
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	306
HspAI	GCGC	1 cut(s)	398
KasI	GGCGCC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	2 cut(s)	174, 348
LpnPI	CCDG	3 cut(s)	36, 235, 363
Lsp1109I	GCAGC	2 cut(s)	345, 427
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	161, 365
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	274
Mly113I	GGCGCC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	416
MspI	CCGG	2 cut(s)	222, 350
MspR9I	CCNGG	2 cut(s)	222, 223
MvnI	CGCG	4 cut(s)	18, 24, 75, 210
MwoI	GCNNNNNNNGC	2 cut(s)	111, 404
NarI	GGCGCC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	222, 223
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	2 cut(s)	40, 399
NruI	TCGCGA	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PciSI	GCTCTTC	2 cut(s)	174, 348
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	13, 261, 365
PkrI	GCNGC	4 cut(s)	74, 231, 360, 442
PluTI	GGCGCC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	40, 399
PsuI	RGATCY	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	210
SapI	GCTCTTC	2 cut(s)	174, 348
SatI	GCNGC	4 cut(s)	73, 230, 359, 441
Sau3AI	GATC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	222, 223
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	130, 183, 294, 341, 360
SfcI	CTRYAG	1 cut(s)	402
SfoI	GGCGCC	1 cut(s)	399
SmaI	CCCGGG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	6 cut(s)	18, 24, 73, 105, 229, 377
SspDI	GGCGCC	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	220, 221
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	341
TasI	AATT	1 cut(s)	274
TauI	GCSGC	2 cut(s)	75, 232
TfiI	GAWTC	3 cut(s)	13, 261, 365
TseI	GCWGC	2 cut(s)	358, 440
TspMI	CCCGGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.