RLG00000018984

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010610
Physical Location & Seq
Reverse (-)
44022117 .. 44022497
381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018984

Sequence Viewer

Length: 381 bp
ATGGCCGTGAGAACTGTAGTCGTGGTAGGTGAGAGGGTTCCTCTCGTAGAGGGGAGGGGGCTTCTCGCGGTGGTGTCGGTGCGTCCCGTGGCAAGGGAGAAGGTGCCTCTCATAGTCGTGGTGGAAGTGGTTCCCAGAAAGTTGGCGAGGGTGATTCCCGAGGAGGTGGTGGAGCTCCCTGAGGGGAGTTTCCGAGGGAGCGGCGAGGGCTCGTCTCGCGGAGTTCCGGGTAGGGTTGAGCAACCCGTGGTGGCTGATGTACCTGAAGCGGAGGGCGTTGAAGTATTAGAGATCTCGTGTTCGCCACGGGGGCGGTTGCTCCTTGGCGCTACGCCCATTGATCAACCAGGTCCAAGTATGACGAAGGAGCAGATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.29

Weight (kDa)

5.29

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 2 cut(s) 68, 219
AciI CCGC 5 cut(s) 68, 201, 219, 269, 313
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 3
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 41, 163
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 180
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 177, 212
BauI CACGAG 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 379
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 310
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 228, 348
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 39, 105, 132
BmrFI CCNGG 2 cut(s) 228, 348
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 6 cut(s) 87, 159, 193, 246, 305, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 6 cut(s) 87, 159, 193, 246, 305, 322
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 176
Bsh1236I CGCG 2 cut(s) 68, 219
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 177, 212
Bsp143I GATC 2 cut(s) 291, 340
BspACI CCGC 5 cut(s) 68, 201, 219, 269, 313
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 68, 219
BspLI GGNNCC 3 cut(s) 39, 105, 132
BspT107I GGYRCC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 201
BssECI CCNNGG 6 cut(s) 87, 159, 193, 246, 305, 322
BssMI GATC 2 cut(s) 291, 340
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 3 cut(s) 87, 246, 305
BstFNI CGCG 2 cut(s) 68, 219
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 2 cut(s) 294, 343
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 291, 340
BstMWI GCNNNNNNNGC 3 cut(s) 207, 216, 310
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 226, 346
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 2 cut(s) 68, 219
BstX2I RGATCY 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 3 cut(s) 87, 246, 305
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 1 cut(s) 71
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 1 cut(s) 260
CviJI RGCY 5 cut(s) 5, 61, 175, 210, 254
CviKI_1 RGCY 5 cut(s) 5, 61, 175, 210, 254
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 293, 342
DpnII GATC 2 cut(s) 291, 340
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 177, 212
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 177, 212
ErhI CCWWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 219
FaiI YATR 2 cut(s) 113, 359
FaqI GGGAC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 202
FriOI GRGCYC 2 cut(s) 177, 212
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 379
GlaI GCGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 329
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 41, 163
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 94, 358
HpyCH4III ACNGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 216, 310
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 291, 340
LmnI GCTCC 5 cut(s) 172, 180, 198, 324, 367
LpnPI CCDG 6 cut(s) 148, 192, 240, 276, 333, 360
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 1 cut(s) 379
MalI GATC 2 cut(s) 293, 342
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 291, 340
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 2 cut(s) 177, 212
MroXI GAANNNNTTC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 228, 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 2 cut(s) 68, 219
MwoI GCNNNNNNNGC 3 cut(s) 207, 216, 310
NciI CCSGG 1 cut(s) 228
NdeII GATC 2 cut(s) 291, 340
NlaIV GGNNCC 3 cut(s) 39, 105, 132
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 3 cut(s) 39, 105, 132
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 291, 340
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 228, 348
SduI GDGCHC 2 cut(s) 177, 212
SetI ASST 6 cut(s) 31, 105, 168, 177, 265, 352
SexAI ACCWGGT 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 116
SsiI CCGC 5 cut(s) 68, 201, 219, 269, 313
SspMI CTAG 1 cut(s) 379
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 226, 346
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 16
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.