Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Reverse (-)

95997146 .. 95997798

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTCGGGGATGTCGGACACGTGGTGAGATCTAGGGTTATCATCCTTGCATGTCCTATGGTCTTGGTGTTCTCGAGGTCCTTATATAAGGACAAGGGAGAAGGGTGGAGATGGTTACTGTTCCTGCGTTCGTGGTGGAGTTTGAAAGAAACAACGGTGAGACACGGGGGTGGAGGATTTGAATTTTGCGGGGGAGTATTGGGGAAGGCGATATCGAAAGGAAACGACCGATCGGGGATCCGTATCGCTCGGAGTATGGTGCGTGAGAATAGTAGTCGTGGTAGGCGAGAAGGTTCCTCTCGTGGAGGGGAAGGGACCTCTCTTGCGGTGTCGGTACGTCCGTGGCGGGGAGAAGGGGCTTCTCGCCATTGCGGTGTAGGTGGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

11.21

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	189, 326, 346, 372
AclWI	GGATC	2 cut(s)	232, 245
AcsI	RAATTY	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	145, 182
AleI	CACNNNNGTG	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	232, 245
Ama87I	CYCGRG	2 cut(s)	5, 73
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	78, 315
AsuHPI	GGTGA	2 cut(s)	37, 169
AvaI	CYCGRG	2 cut(s)	5, 73
AvaII	GGWCC	2 cut(s)	78, 315
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BamHI	GGATCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	22
BccI	CCATC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	78, 315
BmeT110I	CYCGRG	2 cut(s)	5, 73
BmgT120I	GGNCC	2 cut(s)	78, 315
BmiI	GGNNCC	3 cut(s)	239, 295, 316
BsaAI	YACGTR	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	16, 42
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	367
Bsh1285I	CGRYCG	2 cut(s)	229, 233
BsiEI	CGRYCG	2 cut(s)	229, 233
BsiHKCI	CYCGRG	2 cut(s)	5, 73
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	328
BsoBI	CYCGRG	2 cut(s)	5, 73
Bsp143I	GATC	3 cut(s)	29, 230, 237
BspACI	CCGC	4 cut(s)	189, 326, 346, 372
BspLI	GGNNCC	3 cut(s)	239, 295, 316
BspPI	GGATC	2 cut(s)	232, 245
BsrDI	GCAATG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	29, 230, 237
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	120, 157
BstBAI	YACGTR	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	16, 42
BstKTI	GATC	3 cut(s)	32, 233, 240
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	29, 230, 237
BstMCI	CGRYCG	2 cut(s)	229, 233
BstNSI	RCATGY	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	29, 237
BstYI	RGATCY	2 cut(s)	29, 237
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	16, 42
Cfr13I	GGNCC	2 cut(s)	78, 315
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	1 cut(s)	359
CviKI_1	RGCY	1 cut(s)	359
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	31, 232, 239
DpnII	GATC	3 cut(s)	29, 230, 237
DraIII	CACNNNGTG	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	78, 315
Eco72I	CACGTG	1 cut(s)	22
Eco88I	CYCGRG	2 cut(s)	5, 73
EcoO109I	RGGNCCY	2 cut(s)	78, 315
EcoRV	GATATC	1 cut(s)	213
FaeI	CATG	1 cut(s)	54
FaiI	YATR	5 cut(s)	52, 59, 85, 87, 257
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	50
FauI	CCCGC	2 cut(s)	182, 339
FokI	GGATG	2 cut(s)	23, 29
FspBI	CTAG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	37, 169
Hpy188I	TCNGA	2 cut(s)	17, 252
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	5 cut(s)	95, 199, 284, 305, 347
HpyCH4III	ACNGT	2 cut(s)	120, 157
HpyCH4IV	ACGT	2 cut(s)	21, 337
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	2 cut(s)	21, 337
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	29, 230, 237
LpnPI	CCDG	1 cut(s)	137
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	21, 337
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	3 cut(s)	31, 232, 239
MboI	GATC	3 cut(s)	29, 230, 237
MflI	RGATCY	2 cut(s)	29, 237
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	5 cut(s)	69, 167, 299, 307, 328
MslI	CAYNNNNRTG	2 cut(s)	168, 372
NdeII	GATC	3 cut(s)	29, 230, 237
NlaIII	CATG	1 cut(s)	54
NlaIV	GGNNCC	3 cut(s)	239, 295, 316
NspI	RCATGY	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	283, 338
Ple19I	CGATCG	1 cut(s)	233
PmaCI	CACGTG	1 cut(s)	22
PmlI	CACGTG	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	22
PpuMI	RGGWCCY	2 cut(s)	78, 315
Psp5II	RGGWCCY	2 cut(s)	78, 315
PspCI	CACGTG	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	239, 295, 316
PspPI	GGNCC	2 cut(s)	78, 315
PspPPI	RGGWCCY	2 cut(s)	78, 315
PsuI	RGATCY	2 cut(s)	29, 237
PvuI	CGATCG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	168, 372
Sau3AI	GATC	3 cut(s)	29, 230, 237
Sau96I	GGNCC	2 cut(s)	78, 315
SetI	ASST	6 cut(s)	24, 80, 295, 320, 340, 382
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	78, 315
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	168, 372
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	4 cut(s)	189, 326, 346, 372
SspMI	CTAG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	120, 157
TaiI	ACGT	2 cut(s)	24, 340
TaqI	TCGA	2 cut(s)	74, 215
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	182
TspGWI	ACGGA	2 cut(s)	230, 330
VpaK11BI	GGWCC	2 cut(s)	78, 315
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.