Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010610

Physical Location & Seq

Genomic Coordinates Forward (+)

15735130 .. 15736082

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCCTCTGTAACATTCGGGGCTGTCGGACACGTGGTGAGATATGGGGTTGTTGTCCTTGCACGTCCAACCGTCACGGTGTTCTCGAGGTCCCGATATAAGGACGAGAAGAGAGATATGGAGATGGTTCTTGTTCTGTGTTCGTGTTGGAGGGGCGCCTCTCGCGGTCGTAGTGAAGGTGTTCCCCTCGGGGGCACCGAAGGTGGTTCCCGAGGAGACGGCGAGGGTATTTCTCAAGGAAGTGGAGAGGGTTCGTCCCTTGGAGTTCCGAGTAAGGTTCGGCAACTCGTGGTGGCTGATATACCTAACATGGAGGATGTCGAAGTATTGAAGATCCTGCGTTCGCCGTTGGGGCGATTGCTTCTTGGCGATACACCCGTTGATCAACCCGGTTCGAGTATGACGAGAGGAGCGGATCGCCGAGATGAGGACCAATTGAGCGATTCCGGACAATATCTTGTTACGCCCTTTGAGGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.11

Weight (kDa)

5.48

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010610)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22820
rosa_chinensis	RchiOBHm_Chr1g0322801 RchiOBHm_Chr2g0084191
rosa_laevigata	RLG00000018984
rosa_multiflora	Rmu_co8155004.1_g000001 Rmu_sc0004536.1_g000013 Rmu_sc0015713.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014680 Rroxscaffold_1G00025700 Rroxscaffold_1G00075190 Rroxscaffold_2G00147870 Rroxscaffold_3G00241900 Rroxscaffold_4G00326200 Rroxscaffold_5G00350350 Rroxscaffold_5G00360930 Rroxscaffold_5G00374500 Rroxscaffold_6G00408450 Rroxscaffold_7G00156390 Rroxscaffold_7G00174570 Rroxscaffold_7G00176260
rosa_wichuraiana	Rw5G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	155, 194
AccBSI	CCGCTC	1 cut(s)	413
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	2 cut(s)	165, 413
AclWI	GGATC	2 cut(s)	328, 423
AcvI	CACGTG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	4 cut(s)	100, 191, 427, 473
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	328, 423
Ama87I	CYCGRG	3 cut(s)	85, 188, 210
Aor13HI	TCCGGA	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	90, 430
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	3 cut(s)	85, 188, 210
AvaII	GGWCC	2 cut(s)	90, 430
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BanI	GGYRCC	2 cut(s)	155, 194
BauI	CACGAG	1 cut(s)	287
BbrPI	CACGTG	1 cut(s)	34
BccI	CCATC	2 cut(s)	118, 471
BceAI	ACGGC	2 cut(s)	235, 331
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	2 cut(s)	90, 430
BmeT110I	CYCGRG	3 cut(s)	85, 188, 210
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	90, 430
BmiI	GGNNCC	4 cut(s)	92, 157, 196, 208
BmrFI	CCNGG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	187, 211, 259
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 191, 427, 473
BseAI	TCCGGA	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	187, 211, 259
BseGI	GGATG	2 cut(s)	322, 482
BseLI	CCNNNNNNNGG	4 cut(s)	100, 191, 427, 473
BseRI	GAGGAG	2 cut(s)	228, 423
BseSI	GKGCMC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	169
BshNI	GGYRCC	2 cut(s)	155, 194
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	3 cut(s)	85, 188, 210
BsiSI	CCGG	2 cut(s)	390, 447
BslFI	GGGAC	2 cut(s)	76, 241
BslI	CCNNNNNNNGG	4 cut(s)	100, 191, 427, 473
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	76, 241
BsoBI	CYCGRG	3 cut(s)	85, 188, 210
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	333, 382, 415
BspACI	CCGC	2 cut(s)	165, 413
BspEI	TCCGGA	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	4 cut(s)	92, 157, 196, 208
BspPI	GGATC	2 cut(s)	328, 423
BspT107I	GGYRCC	2 cut(s)	155, 194
BsrBI	CCGCTC	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	187, 211, 259
BssMI	GATC	3 cut(s)	333, 382, 415
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	73, 79
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	322, 482
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	336, 385, 418
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	333, 382, 415
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 352
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	322, 482
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	90, 430
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	2 cut(s)	23, 296
CviKI_1	RGCY	2 cut(s)	23, 296
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	3 cut(s)	335, 384, 417
DpnII	GATC	3 cut(s)	333, 382, 415
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	90, 430
Eco72I	CACGTG	1 cut(s)	34
Eco88I	CYCGRG	3 cut(s)	85, 188, 210
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	1 cut(s)	313
FaiI	YATR	6 cut(s)	45, 99, 119, 302, 311, 401
FaqI	GGGAC	2 cut(s)	76, 241
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	382
FokI	GGATG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	2 cut(s)	390, 447
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	2 cut(s)	390, 447
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	29, 270
Hpy188III	TCNNGA	4 cut(s)	85, 93, 210, 447
HpyAV	CCTTC	2 cut(s)	170, 194
HpyCH4III	ACNGT	2 cut(s)	73, 79
HpyCH4IV	ACGT	2 cut(s)	33, 64
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 352
HpySE526I	ACGT	2 cut(s)	33, 64
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	333, 382, 415
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	3 cut(s)	350, 403, 460
MaeII	ACGT	2 cut(s)	33, 64
MaeIII	GTNAC	3 cut(s)	10, 73, 460
MalI	GATC	3 cut(s)	335, 384, 417
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	333, 382, 415
MboII	GAAGA	2 cut(s)	121, 343
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	434
Mly113I	GGCGCC	1 cut(s)	156
MmeI	TCCRAC	3 cut(s)	7, 92, 128
MroI	TCCGGA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	180
MspI	CCGG	2 cut(s)	390, 447
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	162, 352
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	333, 382, 415
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	4 cut(s)	92, 157, 196, 208
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	3 cut(s)	83, 195, 401
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	443
PluTI	GGCGCC	1 cut(s)	159
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	34
PspN4I	GGNNCC	4 cut(s)	92, 157, 196, 208
PspPI	GGNCC	2 cut(s)	90, 430
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	333, 382, 415
Sau96I	GGNCC	2 cut(s)	90, 430
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	7 cut(s)	36, 67, 92, 181, 205, 279, 307
SfoI	GGCGCC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	90, 430
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	85, 234
SmoI	CTYRAG	2 cut(s)	85, 234
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	2 cut(s)	165, 413
SspDI	GGCGCC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	73, 79
TaiI	ACGT	2 cut(s)	36, 67
TaqI	TCGA	3 cut(s)	86, 321, 395
TasI	AATT	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	90, 430
XhoI	CTCGAG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.