Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

18548575 .. 18549373

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTTCTAGGGAAGATAACTGTTGCTGGCAAAGAAAGCTATGGTGCTGACAAACAACAACCTACATTTACGGTGGAAGTGCTATGGATCAGGGGAATAAAGAAGCTGTGTCCACTATTTCCTTTGCTTGTGAAGGGTCGTAACCTCTACAAATTGAGAACGTTTAGACAGAGTTGGAGTGAAGAAGCTGAAAGATCAAAAGTGCTTGCTGAGAAGCACAGACGAGGTGAAGCAGCAAGGCGTGTTAGAGCAATGAAAAAATCAAGGAAATTGACTGAAAATAGAGGTGTGAAGTGTCAGAAAAAAATCACATTCTACCAGACCAAACCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

112

Amino Acids

12.94

Weight (kDa)

10.65

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7699	PF24766	3 - 59	1.2e-21	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	161
AclWI	GGATC	1 cut(s)	95
AluBI	AGCT	3 cut(s)	39, 106, 188
AluI	AGCT	3 cut(s)	39, 106, 188
AlwI	GGATC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	87, 194
BspCNI	CTCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	258
BssMI	GATC	2 cut(s)	87, 194
Bst4CI	ACNGT	2 cut(s)	22, 73
BstC8I	GCNNGC	2 cut(s)	28, 207
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	90, 197
BstMBI	GATC	2 cut(s)	87, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	28, 207
CviJI	RGCY	3 cut(s)	39, 106, 188
CviKI_1	RGCY	3 cut(s)	39, 106, 188
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	89, 196
DpnII	GATC	2 cut(s)	87, 194
FaiI	YATR	2 cut(s)	42, 85
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	1 cut(s)	234
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	300
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	22, 73
HpyCH4IV	ACGT	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	87, 194
LpnPI	CCDG	3 cut(s)	12, 76, 332
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	89, 196
MboI	GATC	2 cut(s)	87, 194
MboII	GAAGA	2 cut(s)	25, 194
MluCI	AATT	3 cut(s)	152, 269, 331
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	155, 218, 278
MwoI	GCNNNNNNNGC	1 cut(s)	36
NdeII	GATC	2 cut(s)	87, 194
PkrI	GCNGC	1 cut(s)	235
Psp1406I	AACGTT	1 cut(s)	161
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	87, 194
SetI	ASST	8 cut(s)	41, 64, 108, 147, 164, 190, 229, 289
Sse9I	AATT	3 cut(s)	152, 269, 331
SspMI	CTAG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	22, 73
TaiI	ACGT	1 cut(s)	164
TasI	AATT	3 cut(s)	152, 269, 331
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	269
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.