Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

18549495 .. 18549935

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACAAGTAAAGCCTCCCTATGTTTTGGAAGGCATGAGAAATCAGCTCGCCCTAATATTGATAGAGATCCAGCTCTTCATTCTCAGGCTGTCCTTCCATTTCCTCACCAATCTCTTCTAGAATTTCAACACAGGAGCGCACCTTTCCAGTCTCTCGGTCATGTCATGGGCTCCATTTCAACCATGTTGAGATATCCTGTGACAACTCATTTTGATGCATTTATTGAACCTGCCTCACAATTTCATAGGTTTTGTAACAGCAATTATAGATTCCATGGTTACATGTACAATCTCGAGGATTGGAATCACTTATCTGGAGTGAATGTTGGTAGGCCATTTCGTCTGTATATTTCCGGAGCTGAGAATAGGGGCAATGGAGGTATAGAGTTTGCTCTATTCTACAGTAGGATGTTATTACTGAAGATCTGTATGCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

147

Amino Acids

16.75

Weight (kDa)

9.18

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	353
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	128, 180, 227
AluBI	AGCT	3 cut(s)	47, 74, 359
AluI	AGCT	3 cut(s)	47, 74, 359
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	353
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	336
BsaBI	GATNNNNATC	2 cut(s)	66, 303
BsaJI	CCNNGG	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	379
Bse8I	GATNNNNATC	2 cut(s)	66, 303
BseAI	TCCGGA	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	2 cut(s)	66, 303
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	98, 351
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	67, 423
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	97, 352
BspEI	TCCGGA	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	2 cut(s)	67, 423
BssT1I	CCWWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	81, 120
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	84, 360
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	70, 426
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	67, 423
BstNSI	RCATGY	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	67, 423
BstYI	RGATCY	2 cut(s)	67, 423
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	35, 161, 166, 184, 275, 283
CviJI	RGCY	7 cut(s)	14, 47, 74, 89, 171, 334, 359
CviKI_1	RGCY	7 cut(s)	14, 47, 74, 89, 171, 334, 359
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	84, 360
DpnI	GATC	2 cut(s)	69, 425
DpnII	GATC	2 cut(s)	67, 423
Eam1104I	CTCTTC	2 cut(s)	81, 120
EarI	CTCTTC	2 cut(s)	81, 120
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	293
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	6 cut(s)	38, 164, 169, 187, 278, 286
FatI	CATG	6 cut(s)	34, 160, 165, 183, 274, 282
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	1 cut(s)	421
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	6 cut(s)	38, 164, 169, 187, 278, 286
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	270, 304
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	119, 293, 315, 354
HpyAV	CCTTC	2 cut(s)	24, 104
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	84, 360
Hsp92II	CATG	6 cut(s)	38, 164, 169, 187, 278, 286
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	67, 423
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	135, 176, 356
LpnPI	CCDG	8 cut(s)	71, 84, 118, 161, 210, 243, 300, 367
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	199, 254, 278
MalI	GATC	2 cut(s)	69, 425
MboI	GATC	2 cut(s)	67, 423
MboII	GAAGA	3 cut(s)	68, 107, 433
MflI	RGATCY	2 cut(s)	67, 423
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	122, 239, 262
MnlI	CCTC	5 cut(s)	25, 114, 244, 289, 371
Mph1103I	ATGCAT	1 cut(s)	220
MroI	TCCGGA	1 cut(s)	353
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	67, 423
NlaIII	CATG	6 cut(s)	38, 164, 169, 187, 278, 286
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	270, 304
PkrI	GCNGC	1 cut(s)	435
PscI	ACATGT	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	67, 423
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	67, 423
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	49, 76, 145, 232, 251, 361, 382
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	122, 239, 262
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	122, 239, 262
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	270, 304
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	68, 233
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.