Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

20864995 .. 20867138

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGAACAATCGGGCATCTTCGTCAAAGGAAGGCAAAGGAAAGCGGCTGTGGAAGAAGGTGAAGTATCAGCTGGTTGAGTACCACAGTTTGCCGAACTACTTGAGGGACAATGAGTTCATTTTGGGCCATTACCGGTCCGAATGGCCATTGAAGCAGGTCTTGCTTAGTATGTTTACCATCCACAACGAGACGCTAAATGTTTGGACGCATTTGATCGGATTCTTCCTTTTTCTTTCCCTGACCATATACACTGCAATTAAGGTTCCAGAGGTTGTTGATCTTCATGCTCTACAGCATTTTCCTGATGTGCTCAAAAAGGCTGATCTGCACAAATTAAGTGAAGAATTCATGACATGCCTCCCTTCCCTACCCAACATGCCAGATCTAAACAGACTTAGAGAAGAGTTAAAGACATCATTAACTTCAATGGATCTGCTGCCGTCACTCTCTGGTTGGCATGTTATGGAACTTCTGAATAATTGTTTGCCACAACGATTCTCCCATGGCAACCAAACCGATGTCTGTGTTCTGCGAAGCATGAAGGAGGATGTAGCAAACATAATAGCACCACTGATGATTAGACCAATCACAAGATGGCCGTTTTTTGCGTTCTTGGGGGGAGCTATGTTTTGCTTGCTGACCAGCAGCGCATGCCATCTTCTCTCTTGCCACTCTGAACGCATGTCATATATCATGCTCAGGATGGACTATGCTGGAATTGCAGCCCTTATATCCACTTCCTTCTACCCTCTCGTCTACTACACCTTCATGTGCGACCCTTTCTTCTGCGCCCTCTACATGGGATTCATAACCCTCTTGGGAATTGCCACAGTCTTGGTCTCCCTCGTCCCAGTCTTTCAAAATCCCGAATACCGAATTGTCCGTGTATCTCTTTTTCTTGGCATGGGCCTGTCCGGGATTTTACCCGTTATGCACAAACTCATCTTGTTTTCTGATCAACCTGAGGCACTCCATACAACCGGGTATGAGATTCTGATGGGGCTTCTTTACGGGGTTGGAGCCCTAGTTTATGCCACAAGGATTCCAGAAAGATGGATGCCAGGGAAATTCGACATAGCAGGGCACAGCCACCAGCTGTTTCACGTATTGGTAGTGGCAGGCGCATACACCCATTACCGTGCAGGGCTCGTTTACCTCAAATGGCGCGACTTAGCGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

396

Amino Acids

45.14

Weight (kDa)

8.29

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	59 - 89	3e-06	Haemolysin-III related
HlyIII	PF03006	195 - 380	1.2e-56	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	1170
AciI	CCGC	2 cut(s)	46, 1178
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	2 cut(s)	146, 599
AcsI	RAATTY	2 cut(s)	347, 1070
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	154, 429, 863
AjnI	CCWGG	1 cut(s)	1063
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	73, 626, 1099
AluI	AGCT	3 cut(s)	73, 626, 1099
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	185, 847
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	4 cut(s)	127, 146, 599, 910
ApeKI	GCWGC	3 cut(s)	439, 648, 725
ApoI	RAATTY	2 cut(s)	347, 1070
AsiGI	ACCGGT	1 cut(s)	135
AspLEI	GCGC	4 cut(s)	653, 794, 1127, 1170
AspS9I	GGNCC	3 cut(s)	127, 138, 910
AsuC2I	CCSGG	2 cut(s)	919, 985
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	966
BaeGI	GKGCMC	1 cut(s)	1089
BalI	TGGCCA	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	1027, 1152
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	426, 660, 737
BccI	CCATC	6 cut(s)	188, 591, 666, 700, 994, 1050
BceAI	ACGGC	2 cut(s)	427, 586
BciT130I	CCWGG	1 cut(s)	1065
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	2 cut(s)	919, 985
BcoDI	GTCTC	2 cut(s)	185, 847
BfaI	CTAG	1 cut(s)	1028
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	47, 440, 649, 726
BlsI	GCNGC	4 cut(s)	48, 441, 650, 727
Bme1390I	CCNGG	3 cut(s)	919, 985, 1065
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	127, 138, 910
BmiI	GGNNCC	2 cut(s)	267, 1024
BmrFI	CCNGG	3 cut(s)	919, 985, 1065
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	26, 1050
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	124
BpuMI	CCSGG	2 cut(s)	919, 985
BsaAI	YACGTR	1 cut(s)	1108
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	2 cut(s)	505, 1064
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	854
Bse21I	CCTNAGG	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	2 cut(s)	505, 1064
BseGI	GGATG	4 cut(s)	180, 556, 711, 1065
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMII	CTCAG	2 cut(s)	715, 957
BseNI	ACTGG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	1089
BseXI	GCAGC	3 cut(s)	426, 660, 737
BsgI	GTGCAG	2 cut(s)	314, 1164
Bsh1236I	CGCG	1 cut(s)	1170
BshFI	GGCC	4 cut(s)	129, 148, 601, 912
BshTI	ACCGGT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	136, 918, 984
BslFI	GGGAC	2 cut(s)	122, 836
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	2 cut(s)	185, 847
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	122, 836
BsnI	GGCC	4 cut(s)	129, 148, 601, 912
Bso31I	GGTCTC	1 cut(s)	847
Bsp1286I	GDGCHC	4 cut(s)	315, 1027, 1089, 1152
Bsp143I	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	2 cut(s)	46, 1178
BspANI	GGCC	4 cut(s)	129, 148, 601, 912
BspCNI	CTCAG	2 cut(s)	714, 958
BspFNI	CGCG	1 cut(s)	1170
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	267, 1024
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	505, 1064
BssMI	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	89, 835, 1142
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	2 cut(s)	163, 654
BstBAI	YACGTR	1 cut(s)	1108
BstC8I	GCNNGC	3 cut(s)	638, 655, 1123
BstDEI	CTNAG	5 cut(s)	167, 398, 701, 966, 1174
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	4 cut(s)	180, 556, 711, 1065
BstFNI	CGCG	1 cut(s)	1170
BstHHI	GCGC	4 cut(s)	653, 794, 1127, 1170
BstKTI	GATC	6 cut(s)	219, 283, 328, 388, 436, 961
BstMAI	GTCTC	2 cut(s)	185, 847
BstMBI	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 654, 722
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	5 cut(s)	360, 382, 464, 657, 688
BstSCI	CCNGG	3 cut(s)	917, 983, 1063
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	1089
BstUI	CGCG	1 cut(s)	1170
BstV1I	GCAGC	3 cut(s)	426, 660, 737
BstX2I	RGATCY	2 cut(s)	385, 433
BstXI	CCANNNNNNTGG	2 cut(s)	838, 1056
BstYI	RGATCY	2 cut(s)	385, 433
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	4 cut(s)	129, 148, 601, 912
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	4 cut(s)	180, 556, 711, 1065
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 572
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	638, 655, 1123
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	4 cut(s)	653, 794, 1127, 1170
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	127, 138, 910
CpoI	CGGWCCG	1 cut(s)	138
CseI	GACGC	2 cut(s)	202, 217
Csp6I	GTAC	1 cut(s)	82
CspAI	ACCGGT	1 cut(s)	135
CspI	CGGWCCG	1 cut(s)	138
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	5 cut(s)	167, 398, 701, 966, 1174
DpnI	GATC	6 cut(s)	218, 282, 327, 387, 435, 960
DpnII	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
EaeI	YGGCCR	2 cut(s)	146, 599
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	1027, 1152
Eco31I	GGTCTC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	1027, 1152
ErhI	CCWWGG	1 cut(s)	505
Esp3I	CGTCTC	1 cut(s)	185
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	2 cut(s)	122, 836
FauI	CCCGC	1 cut(s)	1171
FbaI	TGATCA	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	4 cut(s)	47, 440, 649, 726
FokI	GGATG	4 cut(s)	167, 563, 718, 1072
FriOI	GRGCYC	2 cut(s)	1027, 1152
Fsp4HI	GCNGC	4 cut(s)	47, 440, 649, 726
FspBI	CTAG	1 cut(s)	1028
GlaI	GCGC	4 cut(s)	652, 793, 1126, 1169
GluI	GCNGC	4 cut(s)	47, 440, 649, 726
HaeIII	GGCC	4 cut(s)	129, 148, 601, 912
HapII	CCGG	3 cut(s)	136, 918, 984
HgaI	GACGC	2 cut(s)	202, 217
HhaI	GCGC	4 cut(s)	653, 794, 1127, 1170
Hin6I	GCGC	4 cut(s)	651, 792, 1125, 1168
HinP1I	GCGC	4 cut(s)	651, 792, 1125, 1168
HinfI	GANTC	5 cut(s)	222, 498, 807, 994, 1045
HpaII	CCGG	3 cut(s)	136, 918, 984
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	177, 760, 1156
Hpy188I	TCNGA	6 cut(s)	142, 221, 477, 679, 958, 999
Hpy188III	TCNNGA	6 cut(s)	269, 305, 352, 703, 869, 1049
Hpy8I	GTNNAC	3 cut(s)	177, 760, 1156
HpyAV	CCTTC	6 cut(s)	26, 52, 375, 538, 754, 778
HpyCH4III	ACNGT	3 cut(s)	89, 835, 1142
HpyCH4IV	ACGT	1 cut(s)	1107
HpyCH4V	TGCA	5 cut(s)	257, 331, 725, 937, 1145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 654, 722
HpyF3I	CTNAG	5 cut(s)	167, 398, 701, 966, 1174
HpySE526I	ACGT	1 cut(s)	1107
HspAI	GCGC	4 cut(s)	651, 792, 1125, 1168
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
LmnI	GCTCC	2 cut(s)	623, 1022
Lsp1109I	GCAGC	3 cut(s)	426, 660, 737
LweI	GCATC	2 cut(s)	26, 1050
MaeI	CTAG	1 cut(s)	1028
MaeII	ACGT	1 cut(s)	1107
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	6 cut(s)	218, 282, 327, 387, 435, 960
MboI	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
MboII	GAAGA	8 cut(s)	12, 67, 217, 275, 356, 416, 653, 778
MflI	RGATCY	2 cut(s)	385, 433
MhlI	GDGCHC	4 cut(s)	315, 1027, 1089, 1152
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	8 cut(s)	258, 335, 347, 481, 720, 825, 879, 1070
MluNI	TGGCCA	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	1000
Mox20I	TGGCCA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	4 cut(s)	261, 338, 410, 422
MslI	CAYNNNNRTG	2 cut(s)	770, 1140
Msp20I	TGGCCA	1 cut(s)	148
MspA1I	CMGCKG	2 cut(s)	73, 1099
MspI	CCGG	3 cut(s)	136, 918, 984
MspR9I	CCNGG	3 cut(s)	919, 985, 1065
MvaI	CCWGG	1 cut(s)	1065
MvnI	CGCG	1 cut(s)	1170
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 654, 722
NciI	CCSGG	2 cut(s)	919, 985
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
NlaIV	GGNNCC	2 cut(s)	267, 1024
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	5 cut(s)	360, 382, 464, 657, 688
PaeI	GCATGC	1 cut(s)	657
PagI	TCATGA	1 cut(s)	351
PfeI	GAWTC	5 cut(s)	222, 498, 807, 994, 1045
PfoI	TCCNGGA	1 cut(s)	917
PinAI	ACCGGT	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	48, 441, 650, 727
Ppu21I	YACGTR	1 cut(s)	1108
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	2 cut(s)	267, 1024
PspPI	GGNCC	3 cut(s)	127, 138, 910
PsuI	RGATCY	2 cut(s)	385, 433
PvuII	CAGCTG	2 cut(s)	73, 1099
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	770, 1140
Rsr2I	CGGWCCG	1 cut(s)	138
RsrII	CGGWCCG	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	261, 338, 410, 422
SatI	GCNGC	4 cut(s)	47, 440, 649, 726
Sau3AI	GATC	6 cut(s)	216, 280, 325, 385, 433, 958
Sau96I	GGNCC	3 cut(s)	127, 138, 910
ScrFI	CCNGG	3 cut(s)	919, 985, 1065
SduI	GDGCHC	4 cut(s)	315, 1027, 1089, 1152
SfaNI	GCATC	2 cut(s)	26, 1050
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	770, 1140
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	8 cut(s)	258, 335, 347, 481, 720, 825, 879, 1070
SsiI	CCGC	2 cut(s)	46, 1178
SspMI	CTAG	1 cut(s)	1028
StyD4I	CCNGG	3 cut(s)	917, 983, 1063
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	89, 835, 1142
TaiI	ACGT	1 cut(s)	1110
TaqI	TCGA	1 cut(s)	1074
TasI	AATT	8 cut(s)	258, 335, 347, 481, 720, 825, 879, 1070
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	5 cut(s)	222, 498, 807, 994, 1045
Tru1I	TTAA	4 cut(s)	261, 338, 410, 422
Tru9I	TTAA	4 cut(s)	261, 338, 410, 422
TscAI	CASTG	2 cut(s)	259, 579
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	3 cut(s)	439, 648, 725
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	6 cut(s)	109, 275, 340, 557, 760, 799
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	2 cut(s)	259, 579
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	347, 1070
XceI	RCATGY	5 cut(s)	360, 382, 464, 657, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.