Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

22906834 .. 22907967

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAGCATATGACCAAGCAAGAATTCATTGCCTCTCTCAGAAGGAAAAGCAGTGGTTTTTCAAGAGGAGCTTCTGTTTACAGAGGGGTTACAAGGCATCATCAACAAGGCAGATGGCAAGCAAGAATAGGCCGTGTTGCCGGGAACAAAGACCTATACCTTGGAACATTCGCTACTGAAGAGGAGGCTGCTGAGGCGTATGATATAGCGGCCATAAAGTTTAGGGGTATTAATGCGGTTACAAATTTTGAGATGAACCGATACGACGTTGAAGCTATTGGCAAGAGTTCTCTTCCTGTTGGTGGGGCCGCAAAGCGCTTAAAGCTCTCACTCGAAGCAGAAGAGCAGAGACCATCTGTGAACCATGATCAGCAGCATCCTCAATGCAGCATTGGGAGCAACATCAATTTCACTTCCATGCAGCCAGTTCAATCCATACCATGTGGGATCCCATACGATGCTGCAGCTGCCAACACTTACTATCACCACCTCTTCCACCAATTTCAACCCAACTACTATGGCGCGTCGGATTCAGCTGGACTGAACCCTAACGTTGCAACTCAGATGAGCATGATGCCGCAGCAGCCAGCTGAGTTTTACATTTGGCCTAATCACCAATCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

209

Amino Acids

23.28

Weight (kDa)

8.53

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 76	1.3e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	524
AciI	CCGC	4 cut(s)	209, 236, 309, 578
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	2 cut(s)	442, 455
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	23, 244
AcuI	CTGAAG	1 cut(s)	198
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	63, 272, 431, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	6 cut(s)	71, 275, 325, 467, 536, 590
AluI	AGCT	6 cut(s)	71, 275, 325, 467, 536, 590
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	442, 455
Aor51HI	AGCGCT	1 cut(s)	317
AoxI	GGCC	4 cut(s)	130, 210, 306, 605
ApoI	RAATTY	2 cut(s)	23, 244
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	318, 524
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	476, 605
BamHI	GGATCC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	108, 361
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	307, 449
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	4 cut(s)	106, 385, 448, 564
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	52, 183, 575, 582
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	81, 197
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	4 cut(s)	132, 212, 308, 607
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	4 cut(s)	132, 212, 308, 607
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	367, 447
BspACI	CCGC	4 cut(s)	209, 236, 309, 578
BspANI	GGCC	4 cut(s)	132, 212, 308, 607
BspCNI	CTCAG	4 cut(s)	51, 184, 574, 583
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	307, 449
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	2 cut(s)	442, 455
BspQI	GCTCTTC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	367, 447
BssT1I	CCWWGG	1 cut(s)	160
Bst6I	CTCTTC	4 cut(s)	174, 297, 336, 497
BstC8I	GCNNGC	2 cut(s)	120, 588
BstDEI	CTNAG	4 cut(s)	38, 192, 561, 591
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	2 cut(s)	318, 524
BstKTI	GATC	2 cut(s)	370, 450
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	2 cut(s)	367, 447
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 322, 396, 467, 583
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	132, 212, 308, 607
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	120, 588
CfoI	GCGC	2 cut(s)	318, 524
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	513
CviAII	CATG	4 cut(s)	365, 418, 441, 571
DdeI	CTNAG	4 cut(s)	38, 192, 561, 591
DpnI	GATC	2 cut(s)	369, 449
DpnII	GATC	2 cut(s)	367, 447
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	4 cut(s)	174, 297, 336, 497
EarI	CTCTTC	4 cut(s)	174, 297, 336, 497
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	368, 421, 444, 574
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	4 cut(s)	364, 417, 440, 570
FauNDI	CATATG	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	1 cut(s)	363
GlaI	GCGC	2 cut(s)	317, 523
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	4 cut(s)	132, 212, 308, 607
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	2 cut(s)	318, 524
Hin1II	CATG	4 cut(s)	368, 421, 444, 574
Hin6I	GCGC	2 cut(s)	316, 522
HinP1I	GCGC	2 cut(s)	316, 522
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	476, 605
Hpy166II	GTNNAC	2 cut(s)	79, 361
Hpy188I	TCNGA	3 cut(s)	41, 529, 564
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	2 cut(s)	79, 361
Hpy99I	CGWCG	2 cut(s)	269, 529
HpyAV	CCTTC	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	267, 552
HpyCH4V	TGCA	5 cut(s)	4, 387, 421, 464, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 322, 396, 467, 583
HpyF3I	CTNAG	4 cut(s)	38, 192, 561, 591
HpySE526I	ACGT	2 cut(s)	267, 552
Hsp92II	CATG	4 cut(s)	368, 421, 444, 574
HspAI	GCGC	2 cut(s)	316, 522
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	367, 447
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	68, 396
LpnPI	CCDG	5 cut(s)	154, 309, 438, 522, 600
LweI	GCATC	4 cut(s)	106, 385, 448, 564
MaeII	ACGT	2 cut(s)	267, 552
MaeIII	GTNAC	2 cut(s)	88, 238
MalI	GATC	2 cut(s)	369, 449
MboI	GATC	2 cut(s)	367, 447
MboII	GAAGA	4 cut(s)	191, 284, 353, 484
MflI	RGATCY	1 cut(s)	447
MluCI	AATT	4 cut(s)	23, 244, 406, 500
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	8 cut(s)	43, 59, 77, 175, 178, 187, 390, 500
MseI	TTAA	2 cut(s)	231, 320
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	3 cut(s)	467, 536, 590
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	5 cut(s)	194, 322, 396, 467, 583
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	2 cut(s)	367, 447
NlaIII	CATG	4 cut(s)	368, 421, 444, 574
NlaIV	GGNNCC	2 cut(s)	307, 449
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	307, 449
PspPI	GGNCC	1 cut(s)	306
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	447
PvuII	CAGCTG	3 cut(s)	467, 536, 590
RseI	CAYNNNNRTG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	231, 320
Sau3AI	GATC	2 cut(s)	367, 447
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	142
SfaNI	GCATC	4 cut(s)	106, 385, 448, 564
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	4 cut(s)	23, 244, 406, 500
SsiI	CCGC	4 cut(s)	209, 236, 309, 578
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	160
TaiI	ACGT	2 cut(s)	270, 555
TaqI	TCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	23, 244, 406, 500
TauI	GCSGC	3 cut(s)	212, 311, 580
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	231, 320
Tru9I	TTAA	2 cut(s)	231, 320
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	16, 269
TspRI	CASTG	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	2 cut(s)	23, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.