pycom15g33680

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004821
Physical Location & Seq
Reverse (-)
33164624 .. 33164980
357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGAGGGTCGTATCATAAAGATGGCTTATGCCAGGCCGAAAAAGATGAAGATTGCTCCCCCTTCTTCGCAACCCAAGCCAATAACTTTCAATTTGTATGTGGAAAATTTGCCGTATGAAGCAAGGTCTAAAGATCTCAAGGAGCTCTTCGATTCAGAGGAGTATAATGTTGTTAGAGCGGAAATTGTATTCCAAAATAACCCGCGAATGTCCACGGGATATGGATTTGTGGGCTTCAAAACCAAGACCGAGGCTGAGGCAGCTCTTTCTGCTTCCCACGGGAAGGTAATTTTCCCCTCGGAAACTTCTTTTCCTGCAGCTGCTTATGGGAAGACGAATTCGTGTGGCACGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

9.38

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 97 4.7e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 179
AccII CGCG 2 cut(s) 205, 352
AciI CCGC 3 cut(s) 179, 203, 352
AcsI RAATTY 2 cut(s) 106, 337
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 91, 238
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 145, 263, 320
AluI AGCT 3 cut(s) 145, 263, 320
Alw21I GWGCWC 1 cut(s) 147
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 260, 317, 320
ApoI RAATTY 2 cut(s) 106, 337
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 272, 307, 329
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 315
BglII AGATCT 1 cut(s) 133
BisI GCNGC 3 cut(s) 261, 318, 321
BlsI GCNGC 3 cut(s) 262, 319, 322
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 213, 249, 277, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 4 cut(s) 213, 249, 277, 297
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 272, 307, 329
Bsh1236I CGCG 2 cut(s) 205, 352
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 283
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 3 cut(s) 179, 203, 352
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 2 cut(s) 205, 352
BspMAI CTGCAG 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 179
BssECI CCNNGG 4 cut(s) 213, 249, 277, 297
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 2 cut(s) 213, 277
BstFNI CGCG 2 cut(s) 205, 352
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 76, 260, 269
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 2 cut(s) 205, 352
BstV1I GCAGC 3 cut(s) 272, 307, 329
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 2 cut(s) 213, 277
Cac8I GCNNGC 1 cut(s) 350
CviJI RGCY 8 cut(s) 26, 37, 79, 145, 234, 254, 263, 320
CviKI_1 RGCY 8 cut(s) 26, 37, 79, 145, 234, 254, 263, 320
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 147
FaiI YATR 7 cut(s) 17, 30, 99, 117, 165, 222, 327
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 261, 318, 321
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 261, 318, 321
GluI GCNGC 3 cut(s) 261, 318, 321
HaeIII GGCC 1 cut(s) 37
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 157, 301
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 72, 277
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 260, 269
HpyF3I CTNAG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 61, 142
LpnPI CCDG 3 cut(s) 19, 46, 327
Lsp1109I GCAGC 3 cut(s) 272, 307, 329
MalI GATC 1 cut(s) 135
MbiI CCGCTC 1 cut(s) 179
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 57, 61, 139, 343
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 91, 106, 183, 288, 337
MnlI CCTC 4 cut(s) 151, 244, 250, 307
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 2 cut(s) 205, 352
MwoI GCNNNNNNNGC 3 cut(s) 76, 260, 269
NdeII GATC 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 262, 319, 322
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 3 cut(s) 261, 318, 321
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 128, 147, 265, 288, 322
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 5 cut(s) 91, 106, 183, 288, 337
SsiI CCGC 3 cut(s) 179, 203, 352
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 32
TaqI TCGA 1 cut(s) 150
TaqII GACCGA 1 cut(s) 263
TasI AATT 5 cut(s) 91, 106, 183, 288, 337
TfiI GAWTC 1 cut(s) 152
TseI GCWGC 3 cut(s) 260, 317, 320
TspDTI ATGAA 2 cut(s) 62, 132
XapI RAATTY 2 cut(s) 106, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.