Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

33226139 .. 33229877

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATAAAACAACCCTTATTGGCCTCTGTAAAGAAAACTTGGAAAACTACGTTGTTTTAAGCCATTTCGACCACCCCTTCTCTTTCCCCACGGAAGAACTCCTCCCTCTCACCTCTCCAAAATCCACCACACCTCTTCAAGTACAATCCGACCACCCTTTCTCTCTCCACCTCTCGTCCCCCCTCTCTCTCCCCCAAACCCACTCTCGTTCCACCTCCTTCAGGGCCAAAAAGCTCGGAAATTTCGTCCTTCAACTCTCCGCCGCCGCCCAAGAACAAGCTCTCGACGAAACCCCAGTCCTCGAGGCGGAGCCCATAGAGTTCTCCAACACAAGACTGCTTGCCCATAATGTTCCTTGGCATTGCACCCTGGAAGACATCCGTACTGTGTTCGAGAAGTACGGCACCGTCGTCGACATTGAGGAAATGGAGGGTCGTGTCATAAAGATGGTCTATGCCAGGCCGAAAAAGACGAAGATTCGTCCCCCTTTCTTCACAACCCAACGAACACAGTTGTCAATGATACAAACTGAATTTGGCTGGCATGGTGAATTTTCTGCATTATCTTCACATCATATTTGTGAACATATGTGTATGCTCACTCGTACTTTCCCTGCATACTCGGTGAGATTCTCACCGTCTTTTGGGGGGCGTATAACATTCATTGGATTGCTTCACTCTAGTACTTGTGCAAGGTTGCTGGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

6.86

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	4 cut(s)	261, 264, 267, 308
AcsI	RAATTY	3 cut(s)	241, 533, 551
AcuI	CTGAAG	1 cut(s)	205
AfaI	GTAC	5 cut(s)	144, 385, 401, 607, 685
AfiI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
AgsI	TTSAA	2 cut(s)	140, 254
AjnI	CCWGG	2 cut(s)	369, 458
AluBI	AGCT	2 cut(s)	235, 281
AluI	AGCT	2 cut(s)	235, 281
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	22, 225, 461
ApoI	RAATTY	3 cut(s)	241, 533, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	4 cut(s)	103, 560, 627, 637
AvaI	CYCGRG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	371, 460
BfaI	CTAG	2 cut(s)	681, 709
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	371, 460
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	312, 406
BmrFI	CCNGG	2 cut(s)	371, 460
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	90, 356, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 307, 644
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	371, 460
BseDI	CCNNGG	3 cut(s)	90, 356, 369
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	24, 227, 463
BshNI	GGYRCC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	2 cut(s)	163, 468
BslI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
BsmFI	GGGAC	2 cut(s)	163, 468
BsnI	GGCC	3 cut(s)	24, 227, 463
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	261, 264, 267, 308
BspANI	GGCC	3 cut(s)	24, 227, 463
BspLI	GGNNCC	2 cut(s)	312, 406
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	90, 356, 369
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	371, 460
Bst4CI	ACNGT	4 cut(s)	388, 409, 513, 639
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	342, 542
BstDSI	CCRYGG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	371, 460
BstSCI	CCNGG	2 cut(s)	369, 458
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	24, 227, 463
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	342, 542
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	5 cut(s)	143, 384, 400, 606, 684
CviAII	CATG	1 cut(s)	545
CviJI	RGCY	9 cut(s)	24, 63, 227, 235, 281, 313, 463, 540, 708
CviKI_1	RGCY	9 cut(s)	24, 63, 227, 235, 281, 313, 463, 540, 708
CviQI	GTAC	5 cut(s)	143, 384, 400, 606, 684
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	2 cut(s)	250, 323
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	369, 458
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	548
FaqI	GGGAC	2 cut(s)	163, 468
FatI	CATG	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	2 cut(s)	681, 709
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	3 cut(s)	24, 227, 463
Hin1II	CATG	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	478, 630
HphI	GGTGA	4 cut(s)	103, 560, 627, 637
Hpy166II	GTNNAC	2 cut(s)	415, 584
Hpy188I	TCNGA	2 cut(s)	151, 239
Hpy188III	TCNNGA	2 cut(s)	284, 394
Hpy8I	GTNNAC	2 cut(s)	415, 584
Hpy99I	CGWCG	3 cut(s)	290, 413, 416
HpyAV	CCTTC	4 cut(s)	88, 229, 260, 698
HpyCH4III	ACNGT	4 cut(s)	388, 409, 513, 639
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	366, 560, 617, 692
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	208, 309, 356, 383, 445, 472, 526, 627, 686
MaeI	CTAG	2 cut(s)	681, 709
MaeII	ACGT	1 cut(s)	51
MboII	GAAGA	6 cut(s)	107, 128, 386, 484, 487, 558
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	241, 533, 551
MmeI	TCCRAC	2 cut(s)	174, 351
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	446, 579
MspR9I	CCNGG	2 cut(s)	371, 460
MvaI	CCWGG	2 cut(s)	371, 460
NdeI	CATATG	1 cut(s)	588
NlaIII	CATG	1 cut(s)	548
NlaIV	GGNNCC	2 cut(s)	312, 406
PaeR7I	CTCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 408
PfeI	GAWTC	2 cut(s)	478, 630
PkrI	GCNGC	2 cut(s)	265, 268
Psp6I	CCWGG	2 cut(s)	369, 458
PspGI	CCWGG	2 cut(s)	369, 458
PspN4I	GGNNCC	2 cut(s)	312, 406
PspPI	GGNCC	1 cut(s)	225
PspXI	VCTCGAGB	1 cut(s)	302
RsaI	GTAC	5 cut(s)	144, 385, 401, 607, 685
RsaNI	GTAC	5 cut(s)	143, 384, 400, 606, 684
RseI	CAYNNNNRTG	2 cut(s)	446, 579
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	264, 267
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	685
ScrFI	CCNGG	2 cut(s)	371, 460
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	54, 116, 136, 174, 218, 237, 283, 698
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	446, 579
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	241, 533, 551
SsiI	CCGC	4 cut(s)	261, 264, 267, 308
SspMI	CTAG	2 cut(s)	681, 709
StyD4I	CCNGG	2 cut(s)	369, 458
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	388, 409, 513, 639
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	5 cut(s)	69, 285, 303, 393, 414
TasI	AATT	3 cut(s)	241, 533, 551
TatI	WGTACW	2 cut(s)	142, 683
TauI	GCSGC	2 cut(s)	266, 269
TfiI	GAWTC	2 cut(s)	478, 630
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	17, 652
TspGWI	ACGGA	2 cut(s)	107, 371
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	3 cut(s)	241, 533, 551
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	2 cut(s)	681, 709
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.