Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Forward (+)

35750086 .. 35757772

Gene Structure 7687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCGATTTCAAATCTTGCGGGTTGCAGTCACGGCGGGAACTTAGGCATTTTCGGAGAGACGAGGTTACAGTTCCCATCAACTTCTGGATTGAAAACTCGGATCTCTTGGGCCTCTAAGGATCAATTAGCAGTTGGTCACTTGGGCAAGTCAGATATGAATTCCGGTGTTCGTATGGCATTAGTTGATGCGAAGATTGCACGGAGTGGAGATTTTTCCAAGCCTTCTGACATCCTGGCGTTTGATCTTGTTCAGGGAGCACTTGTAAAATGGAGTCCGGCTGTGGTTGTGGACAGGTCGTTACCTAAGCCTCCAACAGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAGAACTGGGGAACCTTCACCAGGAGATTGGCACAAGAATTTCCGACATGGCAGTTTCTTTTAGTGGACTTGCGGTGTCATGGTGATTCAGCGTCAATTAAGAAAAGGGGACCCCATAGTGTTTCTTCCACGGCTCTTGATGTCCTAAAACTGGTTCAACAGCTTAGATTAACACCTCGGGTTATAGTTGGCCACAGTTTTGGAGGGAAAGTTGCCTTGAGCATGGTGGATCAAGCTGCAAAGCCTTTTGCACGACCAGTCAGAGTTTGGGTTCTAGATGCTACGCCTGGAATAGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGAAGAATTAATATCCGTCCTAAGTACATTGCCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGATGCTCTACTTCAAAAAGGATTCTCCAAAGATGTTGCACAGTGGGTGGTTACTAATCTTCGACCAACCAAGTCTCCTGGTTCATCGCCATCAACCTTGTCATGGGTGTTCGATCTAAAGGGAATTGCTGAAATGTATAAATCTTATGAAGAAACAAATTTATGGAAAATTGTTGAAGATGTGCCTCGAGGTGTCCATGTGAACTTTTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGGAGATCTCCAGAGAATTCATGCGGCTGAGGAGCTTGCTGTGGAGGAGGCAGGTGGAGTGGAAATGCATGTCCTCGAGGATGCAGGCCACTGGGTCCACGCAGATAATCCGGATGGGCTCTTTAGGATCCTTTCCTCTTCTTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

379

Amino Acids

41.29

Weight (kDa)

8.95

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	109 - 370	2.2e-19	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	109 - 213	1.8e-11	alpha/beta hydrolase fold
Hydrolase_4	PF12146	109 - 201	2.5e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1028
AbsI	CCTCGAGG	2 cut(s)	930, 1061
Acc36I	ACCTGC	1 cut(s)	1028
AccIII	TCCGGA	1 cut(s)	1096
AciI	CCGC	6 cut(s)	5, 23, 39, 427, 733, 1010
AclWI	GGATC	5 cut(s)	113, 132, 591, 1108, 1121
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	5 cut(s)	163, 339, 392, 901, 1002
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	4 cut(s)	375, 505, 732, 846
AgsI	TTSAA	6 cut(s)	15, 97, 512, 758, 920, 955
AjnI	CCWGG	5 cut(s)	237, 374, 640, 655, 820
AluBI	AGCT	5 cut(s)	323, 517, 590, 969, 1021
AluI	AGCT	5 cut(s)	323, 517, 590, 969, 1021
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	56, 822
AlwI	GGATC	5 cut(s)	113, 132, 591, 1108, 1121
Ama87I	CYCGRG	3 cut(s)	531, 930, 1061
Aor13HI	TCCGGA	1 cut(s)	1096
AoxI	GGCC	3 cut(s)	114, 544, 1072
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	5 cut(s)	163, 339, 392, 901, 1002
AseI	ATTAAT	1 cut(s)	689
AspS9I	GGNCC	4 cut(s)	114, 464, 673, 1081
AsuHPI	GGTGA	2 cut(s)	364, 449
AvaI	CYCGRG	3 cut(s)	531, 930, 1061
AvaII	GGWCC	3 cut(s)	464, 673, 1081
BalI	TGGCCA	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	1113
BanII	GRGCYC	2 cut(s)	985, 1107
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	6 cut(s)	88, 659, 684, 841, 972, 1094
BceAI	ACGGC	2 cut(s)	52, 501
BciT130I	CCWGG	5 cut(s)	239, 376, 642, 657, 822
BcoDI	GTCTC	2 cut(s)	56, 822
BfaI	CTAG	3 cut(s)	344, 629, 986
BfuAI	ACCTGC	1 cut(s)	1028
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	3 cut(s)	6, 591, 1011
BlsI	GCNGC	3 cut(s)	7, 592, 1012
Bme1390I	CCNGG	5 cut(s)	239, 376, 642, 657, 822
Bme18I	GGWCC	3 cut(s)	464, 673, 1081
BmeT110I	CYCGRG	3 cut(s)	531, 930, 1061
BmgT120I	GGNCC	4 cut(s)	114, 464, 673, 1081
BmiI	GGNNCC	5 cut(s)	367, 465, 466, 1082, 1115
BmrFI	CCNGG	5 cut(s)	239, 376, 642, 657, 822
BmrI	ACTGGG	2 cut(s)	370, 1087
BmsI	GCATC	4 cut(s)	181, 622, 736, 1057
BmuI	ACTGGG	2 cut(s)	370, 1087
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	980
Bpu10I	CCTNAGC	2 cut(s)	309, 1014
BpuEI	CTTGAG	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	483, 530
BsaWI	WCCGGW	2 cut(s)	167, 1096
BsaXI	ACNNNNNCTCC	6 cut(s)	252, 282, 549, 579, 802, 832
Bsc4I	CCNNNNNNNGG	4 cut(s)	375, 505, 732, 846
Bse1I	ACTGG	4 cut(s)	365, 510, 611, 1082
Bse3DI	GCAATG	1 cut(s)	707
BseAI	TCCGGA	1 cut(s)	1096
BseBI	CCWGG	5 cut(s)	239, 376, 642, 657, 822
BseDI	CCNNGG	2 cut(s)	483, 530
BseGI	GGATG	7 cut(s)	234, 670, 676, 742, 751, 1072, 1105
BseLI	CCNNNNNNNGG	4 cut(s)	375, 505, 732, 846
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	4 cut(s)	365, 510, 611, 1082
BseRI	GAGGAG	2 cut(s)	1031, 1046
BseXI	GCAGC	1 cut(s)	577
BshFI	GGCC	3 cut(s)	116, 546, 1074
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	3 cut(s)	531, 930, 1061
BsiSI	CCGG	3 cut(s)	168, 281, 1097
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	4 cut(s)	375, 505, 732, 846
BsmAI	GTCTC	2 cut(s)	56, 822
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	116, 546, 1074
BsoBI	CYCGRG	3 cut(s)	531, 930, 1061
Bsp1286I	GDGCHC	3 cut(s)	265, 985, 1107
Bsp13I	TCCGGA	1 cut(s)	1096
Bsp143I	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
BspACI	CCGC	6 cut(s)	5, 23, 39, 427, 733, 1010
BspANI	GGCC	3 cut(s)	116, 546, 1074
BspCNI	CTCAG	1 cut(s)	1006
BspEI	TCCGGA	1 cut(s)	1096
BspLI	GGNNCC	5 cut(s)	367, 465, 466, 1082, 1115
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	5 cut(s)	113, 132, 591, 1108, 1121
BsrDI	GCAATG	1 cut(s)	707
BsrI	ACTGG	4 cut(s)	365, 510, 611, 1082
BssECI	CCNNGG	2 cut(s)	483, 530
BssMI	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
Bst2UI	CCWGG	5 cut(s)	239, 376, 642, 657, 822
Bst4CI	ACNGT	3 cut(s)	75, 551, 786
Bst6I	CTCTTC	1 cut(s)	1129
BstC8I	GCNNGC	3 cut(s)	971, 1023, 1072
BstDEI	CTNAG	6 cut(s)	46, 120, 309, 518, 701, 1014
BstDSI	CCRYGG	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstF5I	GGATG	7 cut(s)	234, 670, 676, 742, 751, 1072, 1105
BstKTI	GATC	7 cut(s)	108, 127, 250, 586, 859, 994, 1116
BstMAI	GTCTC	2 cut(s)	56, 822
BstMBI	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 200
BstNI	CCWGG	5 cut(s)	239, 376, 642, 657, 822
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	5 cut(s)	237, 374, 640, 655, 820
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	3 cut(s)	105, 991, 1113
BstXI	CCANNNNNNTGG	2 cut(s)	382, 554
BstYI	RGATCY	3 cut(s)	105, 991, 1113
BsuRI	GGCC	3 cut(s)	116, 546, 1074
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	813
BtsCI	GGATG	7 cut(s)	234, 670, 676, 742, 751, 1072, 1105
BtsIMutI	CAGTG	2 cut(s)	791, 1075
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	3 cut(s)	971, 1023, 1072
Cfr13I	GGNCC	4 cut(s)	114, 464, 673, 1081
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	705
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	8 cut(s)	335, 402, 434, 577, 846, 941, 1007, 1055
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	6 cut(s)	46, 120, 309, 518, 701, 1014
DpnI	GATC	7 cut(s)	107, 126, 249, 585, 858, 993, 1115
DpnII	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
DraIII	CACNNNGTG	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	1129
EarI	CTCTTC	1 cut(s)	1129
Eco24I	GRGCYC	2 cut(s)	985, 1107
Eco47I	GGWCC	3 cut(s)	464, 673, 1081
Eco88I	CYCGRG	3 cut(s)	531, 930, 1061
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	3 cut(s)	163, 339, 1002
EcoRII	CCWGG	5 cut(s)	237, 374, 640, 655, 820
EcoT22I	ATGCAT	1 cut(s)	1056
EcoT38I	GRGCYC	2 cut(s)	985, 1107
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	8 cut(s)	338, 405, 437, 580, 849, 944, 1010, 1058
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	8 cut(s)	334, 401, 433, 576, 845, 940, 1006, 1054
FauI	CCCGC	3 cut(s)	16, 32, 726
Fnu4HI	GCNGC	3 cut(s)	6, 591, 1011
FokI	GGATG	7 cut(s)	221, 663, 677, 749, 758, 1079, 1112
FriOI	GRGCYC	2 cut(s)	985, 1107
Fsp4HI	GCNGC	3 cut(s)	6, 591, 1011
FspBI	CTAG	3 cut(s)	344, 629, 986
GluI	GCNGC	3 cut(s)	6, 591, 1011
GsuI	CTGGAG	1 cut(s)	980
HaeIII	GGCC	3 cut(s)	116, 546, 1074
HapII	CCGG	3 cut(s)	168, 281, 1097
HgaI	GACGC	1 cut(s)	435
Hin1II	CATG	8 cut(s)	338, 405, 437, 580, 849, 944, 1010, 1058
HinfI	GANTC	3 cut(s)	277, 440, 765
HpaII	CCGG	3 cut(s)	168, 281, 1097
HphI	GGTGA	2 cut(s)	364, 449
Hpy166II	GTNNAC	4 cut(s)	295, 421, 946, 1084
Hpy188I	TCNGA	6 cut(s)	59, 105, 157, 232, 399, 617
Hpy188III	TCNNGA	6 cut(s)	90, 491, 629, 680, 997, 1097
Hpy8I	GTNNAC	4 cut(s)	295, 421, 946, 1084
HpyAV	CCTTC	2 cut(s)	237, 379
HpyCH4III	ACNGT	3 cut(s)	75, 551, 786
HpyCH4V	TGCA	9 cut(s)	30, 203, 334, 593, 605, 782, 973, 1054, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 200
HpyF3I	CTNAG	6 cut(s)	46, 120, 309, 518, 701, 1014
Hsp92II	CATG	8 cut(s)	338, 405, 437, 580, 849, 944, 1010, 1058
KflI	GGGWCCC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	1096
Kzo9I	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
LmnI	GCTCC	3 cut(s)	260, 966, 1018
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	4 cut(s)	181, 622, 736, 1057
MaeI	CTAG	3 cut(s)	344, 629, 986
MaeIII	GTNAC	5 cut(s)	32, 69, 140, 303, 793
MalI	GATC	7 cut(s)	107, 126, 249, 585, 858, 993, 1115
MboI	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
MboII	GAAGA	8 cut(s)	208, 367, 471, 695, 794, 905, 932, 1116
MflI	RGATCY	3 cut(s)	105, 991, 1113
MhlI	GDGCHC	3 cut(s)	265, 985, 1107
MlsI	TGGCCA	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	341, 422
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	1056
MroI	TCCGGA	1 cut(s)	1096
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	3 cut(s)	453, 524, 689
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	3 cut(s)	168, 281, 1097
MspR9I	CCNGG	5 cut(s)	239, 376, 642, 657, 822
MvaI	CCWGG	5 cut(s)	239, 376, 642, 657, 822
MwoI	GCNNNNNNNGC	2 cut(s)	36, 200
NdeII	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
NlaIII	CATG	8 cut(s)	338, 405, 437, 580, 849, 944, 1010, 1058
NlaIV	GGNNCC	5 cut(s)	367, 465, 466, 1082, 1115
NmuCI	GTSAC	2 cut(s)	32, 140
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	1 cut(s)	1058
PaeR7I	CTCGAG	2 cut(s)	930, 1061
PaqCI	CACCTGC	1 cut(s)	1028
PfeI	GAWTC	2 cut(s)	440, 765
PkrI	GCNGC	3 cut(s)	7, 592, 1012
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	5 cut(s)	237, 374, 640, 655, 820
PspGI	CCWGG	5 cut(s)	237, 374, 640, 655, 820
PspN4I	GGNNCC	5 cut(s)	367, 465, 466, 1082, 1115
PspPI	GGNCC	4 cut(s)	114, 464, 673, 1081
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	2 cut(s)	930, 1061
PsuI	RGATCY	3 cut(s)	105, 991, 1113
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	453, 524, 689
SatI	GCNGC	3 cut(s)	6, 591, 1011
Sau3AI	GATC	7 cut(s)	105, 124, 247, 583, 856, 991, 1113
Sau96I	GGNCC	4 cut(s)	114, 464, 673, 1081
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	5 cut(s)	239, 376, 642, 657, 822
SduI	GDGCHC	3 cut(s)	265, 985, 1107
SfaNI	GCATC	4 cut(s)	181, 622, 736, 1057
Sfr274I	CTCGAG	2 cut(s)	930, 1061
SinI	GGWCC	3 cut(s)	464, 673, 1081
SlaI	CTCGAG	2 cut(s)	930, 1061
SmlI	CTYRAG	3 cut(s)	571, 930, 1061
SmoI	CTYRAG	3 cut(s)	571, 930, 1061
SsiI	CCGC	6 cut(s)	5, 23, 39, 427, 733, 1010
SspMI	CTAG	3 cut(s)	344, 629, 986
StyD4I	CCNGG	5 cut(s)	237, 374, 640, 655, 820
TaaI	ACNGT	3 cut(s)	75, 551, 786
TaqI	TCGA	4 cut(s)	805, 855, 931, 1062
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	2 cut(s)	8, 1013
TfiI	GAWTC	2 cut(s)	440, 765
Tru1I	TTAA	3 cut(s)	453, 524, 689
Tru9I	TTAA	3 cut(s)	453, 524, 689
TscAI	CASTG	2 cut(s)	791, 1082
TseFI	GTSAC	2 cut(s)	32, 140
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	2 cut(s)	32, 140
TspDTI	ATGAA	4 cut(s)	176, 816, 906, 995
TspGWI	ACGGA	2 cut(s)	220, 685
TspRI	CASTG	2 cut(s)	791, 1082
VpaK11BI	GGWCC	3 cut(s)	464, 673, 1081
VspI	ATTAAT	1 cut(s)	689
XagI	CCTNNNNNAGG	1 cut(s)	373
XapI	RAATTY	5 cut(s)	163, 339, 392, 901, 1002
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	1 cut(s)	1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	618
XhoI	CTCGAG	2 cut(s)	930, 1061
XspI	CTAG	3 cut(s)	344, 629, 986
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.