Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Forward (+)

36409995 .. 36410601

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCAGTACTAAACTCGTGGTGGAAGTTCACGACGCAAGCGACCTGATGCCCAAAGACGGCGACGGGTTTGCGAGTCCCTTCGTTGAGGTGGACTTCGAGGGGCAACGGCAGCGGACTCAGACCAAGCCCAAAGACCTCAATCCTTACTGGAACGAGAAGCTCGTCTTCAACATCGACGACCCATCTCACCTCTCCCACAAGACCGTCGACGTTGTCGTTTACAATGACAGAAAAACCGGACACCATAAGAATTTCCTCGGCCGTGTGCGAATCTCCGGCGTCTCCGTCCCTGTCTCCGAGTCTCAGGCCACCGTCCAGCGCTACCCGCTTGATAAACGCGGCCTCTTCTCTAATGTCAAGGGCGATATTGCCCTCAGAATCTACGCTGTTCAAGATTACAGTAGCAAGGCACTGGTGGTGCTGCAGAGGCTGCTCCTCCTCCTCCTCCTCTGCAGGAAATCAATACTAATAGGATCGATGAGGAGATTCATCACCGCCAGTTTGGGGGAGAGAAGATCAAGAAGAAGAAGGAAAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

182

Amino Acids

20.71

Weight (kDa)

10.21

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 107	3.7e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	115, 329, 342, 498
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	2 cut(s)	3, 262
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	10
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	59, 507
AgsI	TTSAA	2 cut(s)	172, 395
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	3 cut(s)	289, 301, 309
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	4 cut(s)	3, 262, 309, 343
ApeKI	GCWGC	3 cut(s)	112, 424, 433
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	182, 487
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	124, 411, 420
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	3 cut(s)	76, 125, 249
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcoDI	GTCTC	3 cut(s)	289, 301, 309
BfmI	CTRYAG	2 cut(s)	425, 454
BfoI	RGCGCY	1 cut(s)	325
BisI	GCNGC	4 cut(s)	113, 343, 425, 434
BlsI	GCNGC	4 cut(s)	114, 344, 426, 435
BmcAI	AGTACT	1 cut(s)	10
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 507
Bse1I	ACTGG	4 cut(s)	6, 155, 420, 501
BseCI	ATCGAT	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	59, 507
BseMII	CTCAG	3 cut(s)	134, 320, 391
BseNI	ACTGG	4 cut(s)	6, 155, 420, 501
BseRI	GAGGAG	6 cut(s)	428, 431, 434, 437, 440, 499
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	124, 411, 420
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	4 cut(s)	5, 264, 311, 345
BshVI	ATCGAT	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	240, 279
BslFI	GGGAC	2 cut(s)	63, 275
BslI	CCNNNNNNNGG	2 cut(s)	59, 507
BsmAI	GTCTC	3 cut(s)	289, 301, 309
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	63, 275
BsnI	GGCC	4 cut(s)	5, 264, 311, 345
Bsp143I	GATC	2 cut(s)	476, 518
BspACI	CCGC	4 cut(s)	115, 329, 342, 498
BspANI	GGCC	4 cut(s)	5, 264, 311, 345
BspCNI	CTCAG	3 cut(s)	133, 319, 390
BspDI	ATCGAT	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	342
BspMAI	CTGCAG	2 cut(s)	429, 458
BspPI	GGATC	1 cut(s)	484
BsrI	ACTGG	4 cut(s)	6, 155, 420, 501
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	476, 518
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	208, 316, 404
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	120, 306, 377
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	479, 521
BstMAI	GTCTC	3 cut(s)	289, 301, 309
BstMBI	GATC	2 cut(s)	476, 518
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 328, 430, 433
BstSFI	CTRYAG	2 cut(s)	425, 454
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	124, 411, 420
BstV2I	GAAGAC	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	4 cut(s)	5, 264, 311, 345
BsuTUI	ATCGAT	1 cut(s)	479
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	479
CseI	GACGC	2 cut(s)	44, 271
Csp6I	GTAC	1 cut(s)	9
CviJI	RGCY	7 cut(s)	5, 130, 163, 264, 311, 345, 433
CviKI_1	RGCY	7 cut(s)	5, 130, 163, 264, 311, 345, 433
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	3 cut(s)	120, 306, 377
DpnI	GATC	2 cut(s)	478, 520
DpnII	GATC	2 cut(s)	476, 518
EaeI	YGGCCR	2 cut(s)	3, 262
EagI	CGGCCG	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	289
FaiI	YATR	1 cut(s)	249
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	63, 275
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	113, 343, 425, 434
Fsp4HI	GCNGC	4 cut(s)	113, 343, 425, 434
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	113, 343, 425, 434
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	4 cut(s)	5, 264, 311, 345
HapII	CCGG	2 cut(s)	240, 279
HgaI	GACGC	2 cut(s)	44, 271
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	6 cut(s)	76, 118, 273, 302, 381, 489
HpaII	CCGG	2 cut(s)	240, 279
HphI	GGTGA	2 cut(s)	182, 487
Hpy166II	GTNNAC	4 cut(s)	31, 94, 211, 223
Hpy188I	TCNGA	3 cut(s)	123, 301, 380
Hpy188III	TCNNGA	3 cut(s)	32, 395, 522
Hpy8I	GTNNAC	4 cut(s)	31, 94, 211, 223
Hpy99I	CGWCG	5 cut(s)	38, 68, 182, 212, 215
HpyAV	CCTTC	2 cut(s)	91, 525
HpyCH4III	ACNGT	3 cut(s)	208, 316, 404
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	427, 456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 328, 430, 433
HpyF3I	CTNAG	3 cut(s)	120, 306, 377
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	282
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	476, 518
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	3 cut(s)	124, 411, 420
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	213
MalI	GATC	2 cut(s)	478, 520
MboI	GATC	2 cut(s)	476, 518
MboII	GAAGA	5 cut(s)	160, 340, 528, 537, 540
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	85, 112, 311
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	240, 279
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	112, 328, 430, 433
NdeII	GATC	2 cut(s)	476, 518
NmeAIII	GCCGAG	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 162, 216
PfeI	GAWTC	3 cut(s)	273, 381, 489
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	114, 344, 426, 435
PleI	GAGTC	3 cut(s)	84, 112, 310
PpsI	GAGTC	3 cut(s)	84, 112, 310
PstI	CTGCAG	2 cut(s)	429, 458
PstNI	CAGNNNCTG	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	209
SatI	GCNGC	4 cut(s)	113, 343, 425, 434
Sau3AI	GATC	2 cut(s)	476, 518
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	3 cut(s)	85, 112, 311
SetI	ASST	6 cut(s)	48, 93, 141, 165, 195, 216
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	2 cut(s)	425, 454
SgrDI	CGTCGACG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	4 cut(s)	115, 329, 342, 498
TaaI	ACNGT	3 cut(s)	208, 316, 404
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	99, 177, 210, 479
TasI	AATT	1 cut(s)	253
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	273, 381, 489
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	3 cut(s)	112, 424, 433
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	420
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.