Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Forward (+)

39151050 .. 39152156

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCATGTACGGCAGGGACCCCTGGGGGGGCCCGCTGGAGATAAACACGGCTGACTCTGCCACCGACGACGACCGCAGCCGGAACCTACAGGATCTGGACAGGGCGGCGCTGTCGTCGCGGCCTCTGGACGAGACTCAGCAGAGCTGGCTGCTGGGTCCCTCCGGCGAGCAGAAGAAGAAGAAGTATGTGGATCTGGGATGCATCATCGTCAGTCGATCGATCTTTGTGTGGACGGTCGGGACGCTGCTGGTCTCGGCCTTCCTGGCGGGCTTCATCACGCTCATCGTCAAGACTGTACCGCGTCACCGCCACTCCCGCCCTCCCCCCGACAACTACACTTTGGCGCTTCGCAAGTCCCTAATGTTCTTCAACGCCCAGCGATCCGGAAAACTCCCAAAGCATAACAATGTGTCGTGGAGGGGTAATTCGTGCTTAAGGGATGGCAATGATCCCTCCACCACTTTCAAAGATCTTGCCGGTGGCTTTTATGATGCCGGAGATGCCATCAAGTTCAACTTCCCCGCCTCCTTTGCCATGACCATGCTCAGCTGGAGCGTCATTGAATACAGTGCTAAGTATGAAGCTGCTGGGGAACTCTCCCATGTTAAAGAAATCATTAAATGGGGATCCGATTACTTTTTGAAGACCTTCAACCATTCTGCCGATTCCATTGACCGACTTGTTGCCCAGGTTGGGGTAGGATCTACTGCCGGAGGAAGTACTACTCCTAATCGATCATTATTGCTGGATGCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

8.8

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	113 - 236	6e-43	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	121, 304
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	9 cut(s)	35, 76, 107, 121, 269, 302, 310, 319, 525
AclWI	GGATC	7 cut(s)	102, 201, 378, 446, 624, 637, 712
AfaI	GTAC	3 cut(s)	11, 300, 724
AfiI	CCNNNNNNNGG	4 cut(s)	28, 29, 696, 697
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	6 cut(s)	373, 469, 517, 566, 646, 655
AjnI	CCWGG	3 cut(s)	23, 264, 690
AluBI	AGCT	3 cut(s)	147, 552, 587
AluI	AGCT	3 cut(s)	147, 552, 587
Alw26I	GTCTC	2 cut(s)	128, 259
AlwI	GGATC	7 cut(s)	102, 201, 378, 446, 624, 637, 712
AlwNI	CAGNNNCTG	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	3 cut(s)	31, 122, 258
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	4 cut(s)	78, 151, 247, 587
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	112, 349
AspS9I	GGNCC	4 cut(s)	19, 31, 32, 158
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	19, 158
BaeGI	GKGCMC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	4 cut(s)	90, 138, 234, 574
BccI	CCATC	2 cut(s)	437, 515
BceAI	ACGGC	2 cut(s)	28, 66
BciT130I	CCWGG	3 cut(s)	25, 266, 692
BcoDI	GTCTC	2 cut(s)	128, 259
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	2 cut(s)	113, 350
BfrI	CTTAAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	6 cut(s)	79, 108, 122, 152, 248, 588
BlpI	GCTNAGC	1 cut(s)	548
BlsI	GCNGC	6 cut(s)	80, 109, 123, 153, 249, 589
BmcAI	AGTACT	1 cut(s)	724
Bme1390I	CCNGG	3 cut(s)	25, 266, 692
Bme18I	GGWCC	2 cut(s)	19, 158
BmgT120I	GGNCC	4 cut(s)	19, 31, 32, 158
BmiI	GGNNCC	8 cut(s)	20, 21, 32, 33, 86, 159, 160, 631
BmrFI	CCNGG	3 cut(s)	25, 266, 692
BmsI	GCATC	5 cut(s)	191, 213, 484, 493, 742
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	2 cut(s)	59, 574
Bpu1102I	GCTNAGC	1 cut(s)	548
Bsa29I	ATCGAT	2 cut(s)	221, 736
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	23, 24, 690
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 29, 696, 697
Bse118I	RCCGGY	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	25, 266, 692
BseCI	ATCGAT	2 cut(s)	221, 736
BseDI	CCNNGG	3 cut(s)	23, 24, 690
BseGI	GGATG	3 cut(s)	206, 448, 757
BseLI	CCNNNNNNNGG	4 cut(s)	28, 29, 696, 697
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	152, 562
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	90, 138, 234, 574
BseYI	CCCAGC	3 cut(s)	154, 378, 590
Bsh1236I	CGCG	2 cut(s)	121, 304
Bsh1285I	CGRYCG	3 cut(s)	76, 221, 240
BshFI	GGCC	3 cut(s)	33, 124, 260
BshVI	ATCGAT	2 cut(s)	221, 736
BsiEI	CGRYCG	3 cut(s)	76, 221, 240
BsiSI	CCGG	6 cut(s)	82, 165, 387, 480, 498, 714
BslFI	GGGAC	4 cut(s)	32, 144, 256, 343
BslI	CCNNNNNNNGG	4 cut(s)	28, 29, 696, 697
BsmAI	GTCTC	2 cut(s)	128, 259
BsmFI	GGGAC	4 cut(s)	32, 144, 256, 343
BsnI	GGCC	3 cut(s)	33, 124, 260
Bso31I	GGTCTC	1 cut(s)	259
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	386
Bsp1720I	GCTNAGC	1 cut(s)	548
BspACI	CCGC	9 cut(s)	35, 76, 107, 121, 269, 302, 310, 319, 525
BspANI	GGCC	3 cut(s)	33, 124, 260
BspCNI	CTCAG	2 cut(s)	151, 561
BspDI	ATCGAT	2 cut(s)	221, 736
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	2 cut(s)	121, 304
BspLI	GGNNCC	8 cut(s)	20, 21, 32, 33, 86, 159, 160, 631
BspPI	GGATC	7 cut(s)	102, 201, 378, 446, 624, 637, 712
BspTI	CTTAAG	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	23, 24, 690
Bst2UI	CCWGG	3 cut(s)	25, 266, 692
Bst4CI	ACNGT	3 cut(s)	238, 298, 572
BstAFI	CTTAAG	1 cut(s)	436
BstC8I	GCNNGC	4 cut(s)	35, 149, 170, 271
BstDEI	CTNAG	3 cut(s)	138, 548, 576
BstF5I	GGATG	3 cut(s)	206, 448, 757
BstFNI	CGCG	2 cut(s)	121, 304
BstH2I	RGCGCY	2 cut(s)	113, 350
BstHHI	GCGC	2 cut(s)	112, 349
BstMAI	GTCTC	2 cut(s)	128, 259
BstMCI	CGRYCG	3 cut(s)	76, 221, 240
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 59, 118, 148, 266, 318, 503, 533
BstNI	CCWGG	3 cut(s)	25, 266, 692
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	23, 264, 690
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	2 cut(s)	121, 304
BstV1I	GCAGC	4 cut(s)	90, 138, 234, 574
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	5 cut(s)	94, 193, 472, 629, 704
BstYI	RGATCY	5 cut(s)	94, 193, 472, 629, 704
Bsu15I	ATCGAT	2 cut(s)	221, 736
BsuRI	GGCC	3 cut(s)	33, 124, 260
BsuTUI	ATCGAT	2 cut(s)	221, 736
BtsCI	GGATG	3 cut(s)	206, 448, 757
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	4 cut(s)	35, 149, 170, 271
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	2 cut(s)	112, 349
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	4 cut(s)	19, 31, 32, 158
ClaI	ATCGAT	2 cut(s)	221, 736
CseI	GACGC	4 cut(s)	253, 293, 547, 744
Csp6I	GTAC	3 cut(s)	10, 299, 723
CviAII	CATG	4 cut(s)	7, 538, 544, 605
CviQI	GTAC	3 cut(s)	10, 299, 723
DdeI	CTNAG	3 cut(s)	138, 548, 576
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	19, 158
EcoO109I	RGGNCCY	3 cut(s)	19, 31, 158
EcoRII	CCWGG	3 cut(s)	23, 264, 690
EcoT22I	ATGCAT	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	4 cut(s)	10, 541, 547, 608
FaiI	YATR	8 cut(s)	8, 189, 405, 492, 539, 545, 582, 606
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	4 cut(s)	32, 144, 256, 343
FatI	CATG	4 cut(s)	6, 537, 543, 604
FauI	CCCGC	4 cut(s)	42, 262, 326, 532
Fnu4HI	GCNGC	6 cut(s)	79, 108, 122, 152, 248, 588
FokI	GGATG	2 cut(s)	213, 455
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	6 cut(s)	79, 108, 122, 152, 248, 588
GlaI	GCGC	2 cut(s)	111, 348
GluI	GCNGC	6 cut(s)	79, 108, 122, 152, 248, 588
GsaI	CCCAGC	3 cut(s)	158, 382, 594
GsuI	CTGGAG	2 cut(s)	59, 574
HaeII	RGCGCY	2 cut(s)	113, 350
HaeIII	GGCC	3 cut(s)	33, 124, 260
HapII	CCGG	6 cut(s)	82, 165, 387, 480, 498, 714
HgaI	GACGC	4 cut(s)	253, 293, 547, 744
HhaI	GCGC	2 cut(s)	112, 349
Hin1II	CATG	4 cut(s)	10, 541, 547, 608
Hin6I	GCGC	2 cut(s)	110, 347
HinP1I	GCGC	2 cut(s)	110, 347
HinfI	GANTC	3 cut(s)	56, 136, 668
HpaII	CCGG	6 cut(s)	82, 165, 387, 480, 498, 714
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	634
Hpy188III	TCNNGA	6 cut(s)	98, 128, 241, 292, 387, 759
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	3 cut(s)	71, 74, 121
HpyAV	CCTTC	2 cut(s)	271, 661
HpyCH4III	ACNGT	3 cut(s)	238, 298, 572
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 59, 118, 148, 266, 318, 503, 533
HpyF3I	CTNAG	3 cut(s)	138, 548, 576
Hsp92II	CATG	4 cut(s)	10, 541, 547, 608
HspAI	GCGC	2 cut(s)	110, 347
KflI	GGGWCCC	2 cut(s)	19, 158
Kpn2I	TCCGGA	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	4 cut(s)	90, 138, 234, 574
LweI	GCATC	5 cut(s)	191, 213, 484, 493, 742
MaeIII	GTNAC	1 cut(s)	305
MboII	GAAGA	5 cut(s)	187, 190, 193, 361, 658
MflI	RGATCY	5 cut(s)	94, 193, 472, 629, 704
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	50, 130
MnlI	CCTC	7 cut(s)	135, 172, 333, 414, 466, 538, 710
Mph1103I	ATGCAT	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	3 cut(s)	437, 609, 621
MslI	CAYNNNNRTG	2 cut(s)	408, 542
MspA1I	CMGCKG	2 cut(s)	37, 552
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	6 cut(s)	82, 165, 387, 480, 498, 714
MspR9I	CCNGG	3 cut(s)	25, 266, 692
MvaI	CCWGG	3 cut(s)	25, 266, 692
MvnI	CGCG	2 cut(s)	121, 304
MwoI	GCNNNNNNNGC	8 cut(s)	12, 59, 118, 148, 266, 318, 503, 533
NlaIII	CATG	4 cut(s)	10, 541, 547, 608
NlaIV	GGNNCC	8 cut(s)	20, 21, 32, 33, 86, 159, 160, 631
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	80, 109, 123, 153, 249, 589
Ple19I	CGATCG	1 cut(s)	221
PleI	GAGTC	2 cut(s)	50, 130
PpsI	GAGTC	2 cut(s)	50, 130
PpuMI	RGGWCCY	2 cut(s)	19, 158
Psp5II	RGGWCCY	2 cut(s)	19, 158
Psp6I	CCWGG	3 cut(s)	23, 264, 690
PspFI	CCCAGC	3 cut(s)	154, 378, 590
PspGI	CCWGG	3 cut(s)	23, 264, 690
PspN4I	GGNNCC	8 cut(s)	20, 21, 32, 33, 86, 159, 160, 631
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	4 cut(s)	19, 31, 32, 158
PspPPI	RGGWCCY	2 cut(s)	19, 158
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	5 cut(s)	94, 193, 472, 629, 704
PvuI	CGATCG	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	3 cut(s)	11, 300, 724
RsaNI	GTAC	3 cut(s)	10, 299, 723
RseI	CAYNNNNRTG	2 cut(s)	408, 542
SaqAI	TTAA	3 cut(s)	437, 609, 621
SatI	GCNGC	6 cut(s)	79, 108, 122, 152, 248, 588
Sau96I	GGNCC	4 cut(s)	19, 31, 32, 158
ScaI	AGTACT	1 cut(s)	724
SchI	GAGTC	2 cut(s)	50, 130
ScrFI	CCNGG	3 cut(s)	25, 266, 692
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	90, 149, 554, 589, 653, 696
SfaNI	GCATC	5 cut(s)	191, 213, 484, 493, 742
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	19, 158
SmiMI	CAYNNNNRTG	2 cut(s)	408, 542
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	9 cut(s)	35, 76, 107, 121, 269, 302, 310, 319, 525
StyD4I	CCNGG	3 cut(s)	23, 264, 690
TaaI	ACNGT	3 cut(s)	238, 298, 572
TaqI	TCGA	3 cut(s)	217, 221, 736
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	2 cut(s)	110, 124
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	437, 609, 621
Tru9I	TTAA	3 cut(s)	437, 609, 621
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	4 cut(s)	78, 151, 247, 587
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	265, 597
TspRI	CASTG	1 cut(s)	577
Vha464I	CTTAAG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	19, 158
XceI	RCATGY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	650
ZrmI	AGTACT	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.