pycom16g10880

histone H2A-K119 monoubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006209
Physical Location & Seq
Forward (+)
7533204 .. 7543017
9814 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1239 bp
ATGGTTCCTGCTGCTGCTCATCATCAAAACGTATCCAACCAACAACAACATAATCTCTACGGCGTTTATGGTGGTTGCGGTGCCAATTACACGGCGGAGATCAGCAGTTTCGGTCTTATGAGTACTAGTCAAGCTGTAGAAGAAGGTTATGAGTATAACTATTATTGCAATAATATTGTTACTGAAACTGATCAGCATCATCATCATCTAGCGGGAATTGATCCAATGGCCGAGGATGAGTCGAGAACTAACAGCGTAAACGAAGCAGGTTCGAGTTCTAAAGATGCTCCGGAAGATAACGAAACATGGCTCCAATTGACTATAGGCGGCGGCTCCAACAACAACCAACCTGCGACCGGGGAACATCCAACCCTCAGCAGCTTACCAAGTAGTACTACTCCTTCTGGTCCCGGATTGGTTGAACTTGATCTTGATCTGTTACCACCAGGCCATGATCACGGTGGTTTTTCGTCATTACGGCAAGTGAGGTCCATGCCGCATATGCCTTCAATGTTTCATGTTCCTCAACATGAAAATATTCTCCGTGCTCCTCCTTCGAATCCGTCTTTCAGGCCTCCGTTTAATTCGAATTTTTCTTCGAGTAACGCTACGTCTTTATATTTCCAGCAACCGGGGCCAGGAATGGGTAGCTCCTCGTCCGGTTTATTTCCTCACCAGGAGGTTAACTGGGCATTTAGGCCAGCAATCCCTTATAATAATATAGGGATGATGGCTTCTACTTCTTTATCTTCTTCTGCTTCTTCTTTTATACAACTGGGTTCATCCTATTTTGCACGCCCATTCCATCATCCTCTTCGTGAATTTAATGTCACCGGGCCAAGCTTAGATTTCAGAGTTGTTGATGCTCCGAGAAGGCCCCAATCCGGCATTTGGTTTACGCTCCAAGCATCCCAAAATCAAGCAAAAGAACCGTTCTTGCCCCAGATACCCAAAAGCTACCTAAGAATCAAGGATGGAAGAATGACAGTTCGGTTGATAAAGAAGTATCTGGTTAATAAGCTGAGACTGGAAAGCGAATCAGAGGTAGAGATAACATGTAGAGGACAGGAGCTTCTACCTTTCTTGACGTTGCAGCATGTAAGAGATAACATCTGGAGTCGAAGGGACGCACTCACTTTGCTTCCAGATTCCTCAACCATTGATCATGTCATGGTACTGCACTATGCTAGGACGACGACAATTACGACGACGACGACGACAACGACTACAACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

45.45

Weight (kDa)

6.07

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAWUL PF16207 327 - 380 1.2e-07 RAWUL domain RING finger- and WD40-associated ubiquitin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
Acc36I ACCTGC 2 cut(s) 257, 358
AccB1I GGYRCC 1 cut(s) 80
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 6 cut(s) 78, 95, 212, 327, 330, 497
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 589, 821
AfaI GTAC 3 cut(s) 124, 394, 1176
AfiI CCNNNNNNNGG 6 cut(s) 356, 631, 638, 644, 884, 891
AflIII ACRYGT 1 cut(s) 1055
AgsI TTSAA 2 cut(s) 422, 510
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 3 cut(s) 445, 637, 675
AluBI AGCT 7 cut(s) 134, 381, 651, 843, 957, 1021, 1072
AluI AGCT 7 cut(s) 134, 381, 651, 843, 957, 1021, 1072
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 7 cut(s) 228, 448, 572, 635, 698, 836, 875
ApeKI GCWGC 4 cut(s) 11, 14, 378, 1093
ApoI RAATTY 2 cut(s) 589, 821
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 5 cut(s) 407, 489, 635, 836, 876
AsuC2I CCSGG 4 cut(s) 358, 411, 633, 835
AsuHPI GGTGA 2 cut(s) 665, 823
AsuII TTCGAA 2 cut(s) 557, 587
AvaII GGWCC 2 cut(s) 407, 489
BanI GGYRCC 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
Bbv12I GWGCWC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 390, 1105
BccI CCATC 3 cut(s) 724, 813, 968
BceAI ACGGC 3 cut(s) 76, 108, 494
BciT130I CCWGG 3 cut(s) 447, 639, 677
BciVI GTATCC 1 cut(s) 43
BclI TGATCA 3 cut(s) 190, 454, 1162
BcnI CCSGG 4 cut(s) 358, 411, 633, 835
BcoDI GTCTC 1 cut(s) 1018
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 3 cut(s) 126, 209, 1188
BfmI CTRYAG 2 cut(s) 135, 321
BfuAI ACCTGC 2 cut(s) 257, 358
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 7 cut(s) 12, 15, 328, 331, 379, 497, 1094
BlsI GCNGC 7 cut(s) 13, 16, 329, 332, 380, 498, 1095
BmcAI AGTACT 2 cut(s) 124, 394
Bme1390I CCNGG 7 cut(s) 358, 411, 447, 633, 639, 677, 835
Bme18I GGWCC 2 cut(s) 407, 489
BmgT120I GGNCC 5 cut(s) 407, 489, 635, 836, 876
BmiI GGNNCC 7 cut(s) 6, 82, 311, 334, 409, 636, 878
BmrFI CCNGG 7 cut(s) 358, 411, 447, 633, 639, 677, 835
BmrI ACTGGG 2 cut(s) 697, 785
BmsI GCATC 4 cut(s) 205, 274, 853, 917
BmuI ACTGGG 2 cut(s) 697, 785
BpmI CTGGAG 1 cut(s) 1135
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 2 cut(s) 557, 587
BpuMI CCSGG 4 cut(s) 358, 411, 633, 835
BsaBI GATNNNNATC 2 cut(s) 195, 432
BsaJI CCNNGG 3 cut(s) 231, 357, 632
BsaWI WCCGGW 2 cut(s) 289, 659
Bsc4I CCNNNNNNNGG 6 cut(s) 356, 631, 638, 644, 884, 891
Bse1I ACTGG 3 cut(s) 692, 780, 1032
Bse8I GATNNNNATC 2 cut(s) 195, 432
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 3 cut(s) 447, 639, 677
BseDI CCNNGG 3 cut(s) 231, 357, 632
BseGI GGATG 7 cut(s) 241, 364, 732, 782, 808, 908, 979
BseJI GATNNNNATC 2 cut(s) 195, 432
BseLI CCNNNNNNNGG 6 cut(s) 356, 631, 638, 644, 884, 891
BseMII CTCAG 2 cut(s) 388, 1013
BseNI ACTGG 3 cut(s) 692, 780, 1032
BseRI GAGGAG 2 cut(s) 540, 643
BseXI GCAGC 2 cut(s) 390, 1105
BsgI GTGCAG 1 cut(s) 1163
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 7 cut(s) 230, 450, 574, 637, 700, 838, 877
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 7 cut(s) 290, 357, 411, 632, 660, 834, 885
BslFI GGGAC 2 cut(s) 393, 1139
BslI CCNNNNNNNGG 6 cut(s) 356, 631, 638, 644, 884, 891
BsmAI GTCTC 1 cut(s) 1018
BsmFI GGGAC 2 cut(s) 393, 1139
BsnI GGCC 7 cut(s) 230, 450, 574, 637, 700, 838, 877
Bsp119I TTCGAA 2 cut(s) 557, 587
Bsp1286I GDGCHC 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
BspACI CCGC 6 cut(s) 78, 95, 212, 327, 330, 497
BspANI GGCC 7 cut(s) 230, 450, 574, 637, 700, 838, 877
BspCNI CTCAG 2 cut(s) 387, 1014
BspEI TCCGGA 1 cut(s) 289
BspLI GGNNCC 7 cut(s) 6, 82, 311, 334, 409, 636, 878
BspMI ACCTGC 2 cut(s) 257, 358
BspPI GGATC 1 cut(s) 215
BspT104I TTCGAA 2 cut(s) 557, 587
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 3 cut(s) 692, 780, 1032
BssECI CCNNGG 3 cut(s) 231, 357, 632
BssMI GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
Bst2UI CCWGG 3 cut(s) 447, 639, 677
Bst4CI ACNGT 3 cut(s) 461, 933, 988
Bst6I CTCTTC 1 cut(s) 819
BstBI TTCGAA 2 cut(s) 557, 587
BstC8I GCNNGC 2 cut(s) 702, 796
BstDEI CTNAG 4 cut(s) 374, 844, 962, 1022
BstF5I GGATG 7 cut(s) 241, 364, 732, 782, 808, 908, 979
BstKTI GATC 7 cut(s) 102, 193, 223, 430, 436, 457, 1165
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 2 cut(s) 502, 634
BstNI CCWGG 3 cut(s) 447, 639, 677
BstNSI RCATGY 2 cut(s) 1059, 1100
BstSCI CCNGG 7 cut(s) 356, 409, 445, 631, 637, 675, 833
BstSFI CTRYAG 2 cut(s) 135, 321
BstV1I GCAGC 2 cut(s) 390, 1105
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 7 cut(s) 230, 450, 574, 637, 700, 838, 877
BtsCI GGATG 7 cut(s) 241, 364, 732, 782, 808, 908, 979
BveI ACCTGC 2 cut(s) 257, 358
Cac8I GCNNGC 2 cut(s) 702, 796
Cfr13I GGNCC 5 cut(s) 407, 489, 635, 836, 876
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 3 cut(s) 123, 393, 1175
CviAII CATG 9 cut(s) 306, 452, 493, 518, 530, 1056, 1097, 1166, 1171
CviQI GTAC 3 cut(s) 123, 393, 1175
DdeI CTNAG 4 cut(s) 374, 844, 962, 1022
DpnI GATC 7 cut(s) 101, 192, 222, 429, 435, 456, 1164
DpnII GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
EciI GGCGGA 1 cut(s) 110
Eco147I AGGCCT 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 407, 489
EcoO109I RGGNCCY 1 cut(s) 876
EcoRII CCWGG 3 cut(s) 445, 637, 675
FaeI CATG 9 cut(s) 309, 455, 496, 521, 533, 1059, 1100, 1169, 1174
FaqI GGGAC 2 cut(s) 393, 1139
FatI CATG 9 cut(s) 305, 451, 492, 517, 529, 1055, 1096, 1165, 1170
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 3 cut(s) 190, 454, 1162
Fnu4HI GCNGC 7 cut(s) 12, 15, 328, 331, 379, 497, 1094
FokI GGATG 7 cut(s) 248, 351, 739, 769, 795, 895, 986
Fsp4HI GCNGC 7 cut(s) 12, 15, 328, 331, 379, 497, 1094
FspBI CTAG 3 cut(s) 126, 209, 1188
GluI GCNGC 7 cut(s) 12, 15, 328, 331, 379, 497, 1094
GsuI CTGGAG 1 cut(s) 1135
HaeIII GGCC 7 cut(s) 230, 450, 574, 637, 700, 838, 877
HapII CCGG 7 cut(s) 290, 357, 411, 632, 660, 834, 885
HgaI GACGC 1 cut(s) 1136
Hin1II CATG 9 cut(s) 309, 455, 496, 521, 533, 1059, 1100, 1169, 1174
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 6 cut(s) 239, 559, 966, 1037, 1117, 1148
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 7 cut(s) 290, 357, 411, 632, 660, 834, 885
HphI GGTGA 2 cut(s) 665, 823
Hpy166II GTNNAC 3 cut(s) 259, 685, 897
Hpy188I TCNGA 3 cut(s) 854, 870, 1042
Hpy188III TCNNGA 7 cut(s) 243, 290, 431, 818, 1084, 1114, 1145
Hpy8I GTNNAC 3 cut(s) 259, 685, 897
Hpy99I CGWCG 5 cut(s) 1198, 1210, 1213, 1216, 1219
HpyAV CCTTC 6 cut(s) 137, 411, 516, 564, 867, 1116
HpyCH4III ACNGT 3 cut(s) 461, 933, 988
HpyCH4IV ACGT 3 cut(s) 30, 611, 1088
HpyCH4V TGCA 4 cut(s) 168, 794, 1093, 1180
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 634
HpyF3I CTNAG 4 cut(s) 374, 844, 962, 1022
HpySE526I ACGT 3 cut(s) 30, 611, 1088
Hsp92II CATG 9 cut(s) 309, 455, 496, 521, 533, 1059, 1100, 1169, 1174
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 3 cut(s) 190, 454, 1162
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
LmnI GCTCC 8 cut(s) 292, 315, 338, 553, 656, 871, 906, 1069
Lsp1109I GCAGC 2 cut(s) 390, 1105
LweI GCATC 4 cut(s) 205, 274, 853, 917
MaeI CTAG 3 cut(s) 126, 209, 1188
MaeII ACGT 3 cut(s) 30, 611, 1088
MaeIII GTNAC 4 cut(s) 178, 438, 602, 829
MalI GATC 7 cut(s) 101, 192, 222, 429, 435, 456, 1164
MboI GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
MboII GAAGA 8 cut(s) 152, 305, 588, 741, 744, 753, 806, 990
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 7 cut(s) 85, 216, 314, 583, 589, 821, 1200
MlyI GAGTC 2 cut(s) 248, 1126
MmeI TCCRAC 3 cut(s) 60, 360, 392
MroI TCCGGA 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 582, 684, 825, 1014
MspI CCGG 7 cut(s) 290, 357, 411, 632, 660, 834, 885
MspR9I CCNGG 7 cut(s) 358, 411, 447, 633, 639, 677, 835
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 3 cut(s) 447, 639, 677
MwoI GCNNNNNNNGC 2 cut(s) 502, 634
NciI CCSGG 4 cut(s) 358, 411, 633, 835
NdeI CATATG 1 cut(s) 501
NdeII GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
NlaIII CATG 9 cut(s) 309, 455, 496, 521, 533, 1059, 1100, 1169, 1174
NlaIV GGNNCC 7 cut(s) 6, 82, 311, 334, 409, 636, 878
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 829
NspI RCATGY 2 cut(s) 1059, 1100
NspV TTCGAA 2 cut(s) 557, 587
PceI AGGCCT 1 cut(s) 574
PciI ACATGT 1 cut(s) 1055
PcsI WCGNNNNNNNCGW 4 cut(s) 1202, 1211, 1214, 1220
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 4 cut(s) 559, 966, 1037, 1148
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 7 cut(s) 13, 16, 329, 332, 380, 498, 1095
PleI GAGTC 2 cut(s) 247, 1125
PpsI GAGTC 2 cut(s) 247, 1125
PscI ACATGT 1 cut(s) 1055
PsiI TTATAA 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 445, 637, 675
PspGI CCWGG 3 cut(s) 445, 637, 675
PspN4I GGNNCC 7 cut(s) 6, 82, 311, 334, 409, 636, 878
PspPI GGNCC 5 cut(s) 407, 489, 635, 836, 876
RsaI GTAC 3 cut(s) 124, 394, 1176
RsaNI GTAC 3 cut(s) 123, 393, 1175
SaqAI TTAA 4 cut(s) 582, 684, 825, 1014
SatI GCNGC 7 cut(s) 12, 15, 328, 331, 379, 497, 1094
Sau3AI GATC 7 cut(s) 99, 190, 220, 427, 433, 454, 1162
Sau96I GGNCC 5 cut(s) 407, 489, 635, 836, 876
ScaI AGTACT 2 cut(s) 124, 394
SchI GAGTC 2 cut(s) 248, 1126
ScrFI CCNGG 7 cut(s) 358, 411, 447, 633, 639, 677, 835
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 4 cut(s) 205, 274, 853, 917
SfcI CTRYAG 2 cut(s) 135, 321
SfuI TTCGAA 2 cut(s) 557, 587
SinI GGWCC 2 cut(s) 407, 489
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 7 cut(s) 85, 216, 314, 583, 589, 821, 1200
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 6 cut(s) 78, 95, 212, 327, 330, 497
SspI AATATT 2 cut(s) 175, 538
SspMI CTAG 3 cut(s) 126, 209, 1188
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 7 cut(s) 356, 409, 445, 631, 637, 675, 833
TaaI ACNGT 3 cut(s) 461, 933, 988
TaiI ACGT 3 cut(s) 33, 614, 1091
TaqI TCGA 6 cut(s) 242, 272, 557, 587, 599, 1120
TaqII GACCGA 1 cut(s) 101
TasI AATT 7 cut(s) 85, 216, 314, 583, 589, 821, 1200
TatI WGTACW 2 cut(s) 122, 392
TauI GCSGC 3 cut(s) 330, 333, 499
TfiI GAWTC 4 cut(s) 559, 966, 1037, 1148
Tru1I TTAA 4 cut(s) 582, 684, 825, 1014
Tru9I TTAA 4 cut(s) 582, 684, 825, 1014
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 4 cut(s) 11, 14, 378, 1093
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 3 cut(s) 506, 546, 771
TspGWI ACGGA 3 cut(s) 533, 552, 567
VpaK11BI GGWCC 2 cut(s) 407, 489
XapI RAATTY 2 cut(s) 589, 821
XceI RCATGY 2 cut(s) 1059, 1100
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 126, 209, 1188
ZrmI AGTACT 2 cut(s) 124, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.