pycom16g16630

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003538
Physical Location & Seq
Reverse (-)
12493036 .. 12494238
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGTCCTACGGCGGATCTGCATCCAATGATGGATACAGAATGCCGGGGCATTCGAGGTATAACTTAGTTGCAAGCAAGCAAATGGTTGGCATATTTCTCACAGTATGGGTAAGGAGTGAACTGAGGGATTCTGTGAAAGACATGAAAGTATCATGTGTTGGAAGAGGATTAATGGGTTATCTTGGAAATAAGGGATCCATTTCAGTGAGCATGTCTTTGCACGATACGACCTTTTGCTTTGTTTGTACTCATTTAACCTCTGGACAAAAGGAGGGTGATGAACTAAGAAGGAATTCTGATGTCATGGAGATCCTTCGGAAGACTAGATTTCCAAAAGTTAAGGGCTCTGGCGCGCTGAAATCCCCAGAAACAATCTTGGAGCATGATCGAGTTATTTGGCTTGGGGATTTAAATTATCGAATTTCCCTCTCTTACCGCTCTGCTAAAGCGTTAGTTGAGATGCAAAACTGGAGGGCCTTGTTAGAGAATGACCAGTTACGGATAGAGCAGAAACGAGGTCGTGTTTTTGGGGGCTGGAATGAGGGGAAGATTTATTTTCCACCAACTTACAAGTATTCAACAAATTCAGACAGATATGCAGGGGATGATATGCACCCAAAGGAGAAACGTCGAACACCTGCTTGGTGTGATCGAATATTGTGGTATGGTGAAGGTCTCCAGCAATTATCGTATGTCCGTGGGGAATCTAGGTTCTCGATCACAGACCAGTTTATGCCGTATTTTGGGCTGAGGTTGAATCAAGCCATAACCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010065 GO:0010067 GO:0010154 GO:0010305 GO:0010588 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0019751 GO:0019932 GO:0022414 GO:0023052 GO:0030258 GO:0031323 GO:0032501 GO:0032502 GO:0032957 GO:0033554 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0035556 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048016 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052866 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071545 GO:0071704 GO:0071944 GO:0090698 GO:0097305 GO:0099402 GO:0104004 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1905392 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

259

Amino Acids

29.57

Weight (kDa)

9.51

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 15 - 237 1.7e-59 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 646
AccBSI CCGCTC 1 cut(s) 438
AccII CGCG 1 cut(s) 353
AciI CCGC 2 cut(s) 12, 436
AclWI GGATC 4 cut(s) 22, 189, 202, 304
AcsI RAATTY 3 cut(s) 292, 420, 583
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 743
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 2 cut(s) 579, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 625, 657
AloI GAACNNNNNNTCC 2 cut(s) 695, 727
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 4 cut(s) 22, 189, 202, 304
AoxI GGCC 1 cut(s) 474
ApoI RAATTY 3 cut(s) 292, 420, 583
AseI ATTAAT 1 cut(s) 170
AsiGI ACCGGT 1 cut(s) 770
Asp700I GAANNNNTTC 1 cut(s) 292
AspLEI GCGC 2 cut(s) 353, 355
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 287, 680
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 749
BccI CCATC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 25, 721
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 2 cut(s) 324, 708
BfuAI ACCTGC 1 cut(s) 646
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 29, 450
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 490, 662
Bpu10I CCTNAGC 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 44, 697
BsaWI WCCGGW 1 cut(s) 770
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 3 cut(s) 473, 493, 727
Bse8I GATNNNNATC 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 44, 697
BseGI GGATG 2 cut(s) 20, 610
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMII CTCAG 2 cut(s) 113, 740
BseNI ACTGG 3 cut(s) 473, 493, 727
BsePI GCGCGC 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 476
BshTI ACCGGT 1 cut(s) 770
BsiSI CCGG 2 cut(s) 44, 771
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 1 cut(s) 680
BsmI GAATGC 2 cut(s) 45, 49
BsnI GGCC 1 cut(s) 476
Bso31I GGTCTC 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 6 cut(s) 14, 194, 309, 385, 649, 717
BspACI CCGC 2 cut(s) 12, 436
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 2 cut(s) 114, 741
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 4 cut(s) 22, 189, 202, 304
BspTNI GGTCTC 1 cut(s) 680
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 3 cut(s) 473, 493, 727
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 2 cut(s) 44, 697
BssHII GCGCGC 1 cut(s) 351
BssMI GATC 6 cut(s) 14, 194, 309, 385, 649, 717
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 73, 77, 353
BstDEI CTNAG 4 cut(s) 64, 122, 284, 749
BstDSI CCRYGG 1 cut(s) 697
BstF5I GGATG 2 cut(s) 20, 610
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 2 cut(s) 353, 355
BstKTI GATC 6 cut(s) 17, 197, 312, 388, 652, 720
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 6 cut(s) 14, 194, 309, 385, 649, 717
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 3 cut(s) 14, 194, 309
BstYI RGATCY 3 cut(s) 14, 194, 309
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 2 cut(s) 20, 610
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 3 cut(s) 73, 77, 353
CfoI GCGC 2 cut(s) 353, 355
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 246
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 5 cut(s) 142, 153, 211, 304, 383
CviJI RGCY 6 cut(s) 345, 400, 476, 534, 748, 764
CviKI_1 RGCY 6 cut(s) 345, 400, 476, 534, 748, 764
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 4 cut(s) 64, 122, 284, 749
DpnI GATC 6 cut(s) 16, 196, 311, 387, 651, 719
DpnII GATC 6 cut(s) 14, 194, 309, 385, 649, 717
DraI TTTAAA 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 347
FaeI CATG 5 cut(s) 145, 156, 214, 307, 386
FatI CATG 5 cut(s) 141, 152, 210, 303, 382
FokI GGATG 2 cut(s) 7, 617
FriOI GRGCYC 1 cut(s) 347
FspBI CTAG 2 cut(s) 324, 708
GlaI GCGC 2 cut(s) 352, 354
GsuI CTGGAG 2 cut(s) 490, 662
HaeIII GGCC 1 cut(s) 476
HapII CCGG 2 cut(s) 44, 771
HhaI GCGC 2 cut(s) 353, 355
Hin1II CATG 5 cut(s) 145, 156, 214, 307, 386
Hin6I GCGC 2 cut(s) 351, 353
HinP1I GCGC 2 cut(s) 351, 353
HinfI GANTC 3 cut(s) 128, 704, 757
HpaII CCGG 2 cut(s) 44, 771
HphI GGTGA 2 cut(s) 287, 680
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 298, 318, 589
Hpy188III TCNNGA 2 cut(s) 261, 715
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 3 cut(s) 282, 323, 665
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 6 cut(s) 20, 71, 220, 463, 599, 613
HpyF3I CTNAG 4 cut(s) 64, 122, 284, 749
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 5 cut(s) 145, 156, 214, 307, 386
HspAI GCGC 2 cut(s) 351, 353
Kzo9I GATC 6 cut(s) 14, 194, 309, 385, 649, 717
LmnI GCTCC 1 cut(s) 379
LweI GCATC 2 cut(s) 29, 450
MaeI CTAG 2 cut(s) 324, 708
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 495
MalI GATC 6 cut(s) 16, 196, 311, 387, 651, 719
MbiI CCGCTC 1 cut(s) 438
MboI GATC 6 cut(s) 14, 194, 309, 385, 649, 717
MboII GAAGA 3 cut(s) 174, 331, 559
MflI RGATCY 3 cut(s) 14, 194, 309
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 5 cut(s) 292, 412, 420, 583, 683
MmeI TCCRAC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 4 cut(s) 170, 254, 339, 410
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 2 cut(s) 44, 771
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 2 cut(s) 45, 49
MvnI CGCG 1 cut(s) 353
NciI CCSGG 1 cut(s) 45
NdeII GATC 6 cut(s) 14, 194, 309, 385, 649, 717
NlaIII CATG 5 cut(s) 145, 156, 214, 307, 386
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 646
PauI GCGCGC 1 cut(s) 351
PctI GAATGC 2 cut(s) 45, 49
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 128, 704, 757
PinAI ACCGGT 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 474
PsuI RGATCY 3 cut(s) 14, 194, 309
PteI GCGCGC 1 cut(s) 351
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 170, 254, 339, 410
Sau3AI GATC 6 cut(s) 14, 194, 309, 385, 649, 717
Sau96I GGNCC 1 cut(s) 474
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 347
SetI ASST 9 cut(s) 59, 233, 260, 520, 631, 640, 676, 713, 755
SfaNI GCATC 2 cut(s) 29, 450
SmiI ATTTAAAT 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 5 cut(s) 292, 412, 420, 583, 683
SsiI CCGC 2 cut(s) 12, 436
SspI AATATT 1 cut(s) 657
SspMI CTAG 2 cut(s) 324, 708
StyD4I CCNGG 1 cut(s) 43
SwaI ATTTAAAT 1 cut(s) 411
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 631
TaqI TCGA 6 cut(s) 53, 388, 418, 631, 652, 716
TasI AATT 5 cut(s) 292, 412, 420, 583, 683
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 3 cut(s) 128, 704, 757
Tru1I TTAA 4 cut(s) 170, 254, 339, 410
Tru9I TTAA 4 cut(s) 170, 254, 339, 410
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 158, 294
TspGWI ACGGA 2 cut(s) 514, 686
TspRI CASTG 1 cut(s) 210
VspI ATTAAT 1 cut(s) 170
XapI RAATTY 3 cut(s) 292, 420, 583
XceI RCATGY 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 2 cut(s) 324, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.