pycom16g16690

Belongs to the eukaryotic ribosomal protein eS1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004695
Physical Location & Seq
Reverse (-)
12586353 .. 12588664
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
ATGACTTTAAATAATTTTTTTATTACATACGATATTATTTACACCGACATATATACACTTTTTATTTACACCTCCTGTTTAGGGTTTTGTGTTTTACAAAGACAAGGGTTTGCTCTCTCTGCCGCTTTTCCCTTCATCTCTTTGCAGGGACCCCGAGCTCGAGCTCCTCCAGTTCCAGCCATGGCCGTCGGAAAGAACAAGAGAATCTCCAAGTCGAAGAAAGGAGGAAAGAAGAAAGCGGTTGATCCGTTTGCCAAGAAGGATTGGTACGACATCAAGGCCCCAAAACTGTTCAACCACCAGAATGTGGGCAAAACCCTCGTCTCCCGTACTCAGGGTACCAAGATTGCTTCCGAAGGACTCAAACATAGAGTCTTTGAGGTATCACTCGCCGACCTTCAGGGTGATGAGGAACATGCTTACAGAAAGATGCGGTTGAGAGCTGAAGATGTCCAAGGGAAGACTGTTCTTACCAATTTCTGGGGAATGAACTTCACCACTGACAAGCTTAGGTCTTTGGTGCGTAAATGGCAAACTTTGATTGAAGCTCATGTGGATGTGAAGACCACTGACAACTATACCCTAAGGATGTTCTGCATTGGCTTTACCAAGAGACGTCCAAATCAGGTCAAGAGGACCTGCTATGCACAGTCTAGCCAAGTCAGACAGATCCGCCGCAAGATGAGCGAGATCATGATTGCCCAGGCAACATCCAGTGATCTTAAGGGCTTGGTCAGCAAGTTCATTGCAGAGAGCATTGGTAAAGAGATTGAGAAGGCTACAATGAGCATCTATCCGTTGCAAAATGTCTTCATTAGGAAGGTGAAGATCTTGAAGGCACCCAAGTTTGATCTCACCAAGCTCATGGAGGTTTACGGTGGCGAAGACGTCGGTGTGAAGGTTGAGAGGCCTGCCGAAGAAGCAGCGCCTGAGGTGCAGCAAGAGATCGTTGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S3Ae

Protein Analysis

320

Amino Acids

36.19

Weight (kDa)

9.83

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3Ae PF01015 76 - 281 3.7e-80 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 619, 891
Acc36I ACCTGC 1 cut(s) 647
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 338, 838
AccB7I CCANNNNNTGG 2 cut(s) 307, 480
AciI CCGC 5 cut(s) 123, 239, 433, 673, 676
AclWI GGATC 2 cut(s) 239, 664
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 2 cut(s) 383, 465
AcyI GRCGYC 2 cut(s) 616, 888
AfaI GTAC 3 cut(s) 269, 331, 340
AfiI CCNNNNNNNGG 4 cut(s) 81, 307, 334, 480
AflII CTTAAG 1 cut(s) 722
AgsI TTSAA 3 cut(s) 295, 545, 835
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 6 cut(s) 158, 164, 443, 508, 548, 862
AluI AGCT 6 cut(s) 158, 164, 443, 508, 548, 862
Alw21I GWGCWC 2 cut(s) 160, 166
Alw26I GTCTC 2 cut(s) 328, 607
AlwI GGATC 2 cut(s) 239, 664
AlwNI CAGNNNCTG 1 cut(s) 929
Ama87I CYCGRG 2 cut(s) 153, 159
AoxI GGCC 3 cut(s) 183, 279, 908
ApeKI GCWGC 2 cut(s) 923, 937
ArsI GACNNNNNNTTYG 4 cut(s) 306, 338, 357, 389
Asp718I GGTACC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 3 cut(s) 149, 280, 636
AsuHPI GGTGA 4 cut(s) 416, 487, 835, 847
AvaI CYCGRG 2 cut(s) 153, 159
AvaII GGWCC 2 cut(s) 149, 636
AxyI CCTNAGG 2 cut(s) 584, 930
BanI GGYRCC 2 cut(s) 338, 838
BanII GRGCYC 2 cut(s) 160, 166
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 4 cut(s) 467, 569, 802, 891
Bbv12I GWGCWC 2 cut(s) 160, 166
BbvI GCAGC 2 cut(s) 935, 949
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 328, 607
BfaI CTAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 929
BfrI CTTAAG 1 cut(s) 722
BfuAI ACCTGC 1 cut(s) 647
BglII AGATCT 1 cut(s) 828
BisI GCNGC 4 cut(s) 123, 676, 924, 938
BlsI GCNGC 4 cut(s) 124, 677, 925, 939
Bme1390I CCNGG 1 cut(s) 704
Bme18I GGWCC 2 cut(s) 149, 636
BmeT110I CYCGRG 2 cut(s) 153, 159
BmgT120I GGNCC 3 cut(s) 149, 280, 636
BmiI GGNNCC 5 cut(s) 150, 151, 282, 340, 840
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 2 cut(s) 420, 798
BpiI GAAGAC 4 cut(s) 467, 569, 802, 891
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 509
BsaHI GRCGYC 2 cut(s) 616, 888
BsaJI CCNNGG 3 cut(s) 180, 454, 702
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 307, 334, 480
Bse1I ACTGG 2 cut(s) 170, 714
Bse21I CCTNAGG 2 cut(s) 584, 930
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 3 cut(s) 180, 454, 702
BseGI GGATG 3 cut(s) 562, 594, 710
BseLI CCNNNNNNNGG 4 cut(s) 81, 307, 334, 480
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 347, 921
BseNI ACTGG 2 cut(s) 170, 714
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 935, 949
BsgI GTGCAG 1 cut(s) 956
BshFI GGCC 3 cut(s) 185, 281, 910
BshNI GGYRCC 2 cut(s) 338, 838
BsiHKAI GWGCWC 2 cut(s) 160, 166
BsiHKCI CYCGRG 2 cut(s) 153, 159
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 4 cut(s) 81, 307, 334, 480
BsmAI GTCTC 2 cut(s) 328, 607
BsmBI CGTCTC 2 cut(s) 328, 607
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 3 cut(s) 185, 281, 910
BsoBI CYCGRG 2 cut(s) 153, 159
Bsp1286I GDGCHC 2 cut(s) 160, 166
Bsp143I GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 5 cut(s) 123, 239, 433, 673, 676
BspANI GGCC 3 cut(s) 185, 281, 910
BspCNI CTCAG 2 cut(s) 346, 922
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 5 cut(s) 150, 151, 282, 340, 840
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 2 cut(s) 239, 664
BspT107I GGYRCC 2 cut(s) 338, 838
BspTI CTTAAG 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 2 cut(s) 170, 714
BssECI CCNNGG 3 cut(s) 180, 454, 702
BssMI GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
BssNI GRCGYC 2 cut(s) 616, 888
BssT1I CCWWGG 2 cut(s) 180, 454
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 4 cut(s) 291, 466, 651, 878
BstACI GRCGYC 2 cut(s) 616, 888
BstAFI CTTAAG 1 cut(s) 722
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 4 cut(s) 333, 509, 584, 930
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 562, 594, 710
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 7 cut(s) 247, 672, 693, 721, 831, 853, 948
BstMAI GTCTC 2 cut(s) 328, 607
BstMBI GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
BstMWI GCNNNNNNNGC 6 cut(s) 119, 529, 684, 735, 920, 934
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 935, 949
BstV2I GAAGAC 4 cut(s) 467, 569, 802, 891
BstX2I RGATCY 2 cut(s) 669, 828
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 2 cut(s) 669, 828
Bsu36I CCTNAGG 2 cut(s) 584, 930
BsuRI GGCC 3 cut(s) 185, 281, 910
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 3 cut(s) 562, 594, 710
BtsIMutI CAGTG 3 cut(s) 498, 567, 721
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 1 cut(s) 912
CaiI CAGNNNCTG 1 cut(s) 929
CciI TCATGA 1 cut(s) 693
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 149, 280, 636
Csp6I GTAC 3 cut(s) 268, 330, 339
CviAII CATG 5 cut(s) 181, 416, 551, 694, 865
CviQI GTAC 3 cut(s) 268, 330, 339
DdeI CTNAG 4 cut(s) 333, 509, 584, 930
DpnI GATC 7 cut(s) 246, 671, 692, 720, 830, 852, 947
DpnII GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 183
EciI GGCGGA 1 cut(s) 662
Ecl136II GAGCTC 2 cut(s) 158, 164
Eco130I CCWWGG 2 cut(s) 180, 454
Eco147I AGGCCT 1 cut(s) 910
Eco24I GRGCYC 2 cut(s) 160, 166
Eco47I GGWCC 2 cut(s) 149, 636
Eco53kI GAGCTC 2 cut(s) 158, 164
Eco57I CTGAAG 2 cut(s) 383, 465
Eco81I CCTNAGG 2 cut(s) 584, 930
Eco88I CYCGRG 2 cut(s) 153, 159
EcoICRI GAGCTC 2 cut(s) 158, 164
EcoO109I RGGNCCY 3 cut(s) 149, 280, 636
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 180, 454
EcoT38I GRGCYC 2 cut(s) 160, 166
ErhI CCWWGG 2 cut(s) 180, 454
Esp3I CGTCTC 2 cut(s) 328, 607
FaeI CATG 5 cut(s) 184, 419, 554, 697, 868
FaqI GGGAC 1 cut(s) 162
FatI CATG 5 cut(s) 180, 415, 550, 693, 864
Fnu4HI GCNGC 4 cut(s) 123, 676, 924, 938
FokI GGATG 3 cut(s) 569, 601, 697
FriOI GRGCYC 2 cut(s) 160, 166
Fsp4HI GCNGC 4 cut(s) 123, 676, 924, 938
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 927
GluI GCNGC 4 cut(s) 123, 676, 924, 938
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 3 cut(s) 185, 281, 910
HhaI GCGC 1 cut(s) 928
Hin1I GRCGYC 2 cut(s) 616, 888
Hin1II CATG 5 cut(s) 184, 419, 554, 697, 868
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 3 cut(s) 204, 360, 372
HphI GGTGA 4 cut(s) 416, 487, 835, 847
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 3 cut(s) 191, 355, 665
Hpy188III TCNNGA 3 cut(s) 631, 694, 832
Hpy8I GTNNAC 1 cut(s) 874
Hpy99I CGWCG 2 cut(s) 191, 893
HpyAV CCTTC 8 cut(s) 142, 253, 350, 407, 769, 814, 829, 892
HpyCH4III ACNGT 4 cut(s) 291, 466, 651, 878
HpyCH4IV ACGT 2 cut(s) 616, 888
HpyCH4V TGCA 6 cut(s) 145, 597, 647, 749, 802, 937
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 529, 684, 735, 920, 934
HpyF3I CTNAG 4 cut(s) 333, 509, 584, 930
HpySE526I ACGT 2 cut(s) 616, 888
Hsp92I GRCGYC 2 cut(s) 616, 888
Hsp92II CATG 5 cut(s) 184, 419, 554, 697, 868
HspAI GCGC 1 cut(s) 926
KflI GGGWCCC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 342
Kzo9I GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 935, 949
LweI GCATC 2 cut(s) 420, 798
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 616, 888
MalI GATC 7 cut(s) 246, 671, 692, 720, 830, 852, 947
MboI GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
MboII GAAGA 9 cut(s) 229, 244, 458, 472, 574, 802, 838, 896, 929
MflI RGATCY 2 cut(s) 669, 828
MhlI GDGCHC 2 cut(s) 160, 166
MluCI AATT 2 cut(s) 13, 475
MlyI GAGTC 2 cut(s) 354, 381
MmeI TCCRAC 1 cut(s) 169
MseI TTAA 3 cut(s) 8, 723, 958
MslI CAYNNNNRTG 2 cut(s) 303, 555
MspCI CTTAAG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 6 cut(s) 119, 529, 684, 735, 920, 934
NcoI CCATGG 1 cut(s) 180
NdeII GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
NlaIII CATG 5 cut(s) 184, 419, 554, 697, 868
NlaIV GGNNCC 5 cut(s) 150, 151, 282, 340, 840
NspI RCATGY 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 1 cut(s) 693
PceI AGGCCT 1 cut(s) 910
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 2 cut(s) 307, 480
PkrI GCNGC 4 cut(s) 124, 677, 925, 939
PleI GAGTC 2 cut(s) 354, 380
PpsI GAGTC 2 cut(s) 354, 380
PpuMI RGGWCCY 2 cut(s) 149, 636
Psp124BI GAGCTC 2 cut(s) 160, 166
Psp5II RGGWCCY 2 cut(s) 149, 636
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 5 cut(s) 150, 151, 282, 340, 840
PspPI GGNCC 3 cut(s) 149, 280, 636
PspPPI RGGWCCY 2 cut(s) 149, 636
PspXI VCTCGAGB 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 2 cut(s) 669, 828
RsaI GTAC 3 cut(s) 269, 331, 340
RsaNI GTAC 3 cut(s) 268, 330, 339
RseI CAYNNNNRTG 2 cut(s) 303, 555
SacI GAGCTC 2 cut(s) 160, 166
SaqAI TTAA 3 cut(s) 8, 723, 958
SatI GCNGC 4 cut(s) 123, 676, 924, 938
Sau3AI GATC 7 cut(s) 244, 669, 690, 718, 828, 850, 945
Sau96I GGNCC 3 cut(s) 149, 280, 636
SchI GAGTC 2 cut(s) 354, 381
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 2 cut(s) 160, 166
SfaNI GCATC 2 cut(s) 420, 798
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 149, 636
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 303, 555
SmlI CTYRAG 2 cut(s) 159, 722
SmoI CTYRAG 2 cut(s) 159, 722
Sse9I AATT 2 cut(s) 13, 475
SseBI AGGCCT 1 cut(s) 910
SsiI CCGC 5 cut(s) 123, 239, 433, 673, 676
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 2 cut(s) 160, 166
StuI AGGCCT 1 cut(s) 910
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 180, 454
TaaI ACNGT 4 cut(s) 291, 466, 651, 878
TaiI ACGT 2 cut(s) 619, 891
TaqI TCGA 2 cut(s) 160, 215
TasI AATT 2 cut(s) 13, 475
TauI GCSGC 2 cut(s) 125, 678
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 3 cut(s) 8, 723, 958
Tru9I TTAA 3 cut(s) 8, 723, 958
TscAI CASTG 3 cut(s) 505, 574, 721
TseI GCWGC 2 cut(s) 923, 937
TspDTI ATGAA 4 cut(s) 124, 503, 733, 802
TspGWI ACGGA 2 cut(s) 237, 786
TspRI CASTG 3 cut(s) 505, 574, 721
Van91I CCANNNNNTGG 2 cut(s) 307, 480
Vha464I CTTAAG 1 cut(s) 722
VpaK11BI GGWCC 2 cut(s) 149, 636
XceI RCATGY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 1 cut(s) 654
ZraI GACGTC 2 cut(s) 617, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.