pycom16g18880

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0005795
Physical Location & Seq
Reverse (-)
15647275 .. 15649672
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1317 bp
ATGCTTGCTTCATGCATATCGAAAGAAAAAAATCCGAGGGAGGGATTGAGGGAAAGTTCTACTGTGAGGAAGGATGAAATTTCTAGCCAGATTAGCGCTCAAATATTTGAATTTTGCGACCCGGAACTATTCCAAGAGACCCTACAGAATTCCGAGGTCACCACTTCTCCAAATTGCTGCTACGAAGAAAATTCATCCTTTGCAACAAACCTTTCACTACCCCCAGATATAGAAACCAAGTTCTGTATCTACCCAGACAACAATGGTAATACTGACGCAAACATTTCCCAAACCCCCACAACTACTAGCACCAACACCACCACCGCTGCTGCCAGCGTTAATACCACCGCAACCACCACCGCTAATACCACCAACAACAATAGTGGCAACCTTTCCATAATCTTTGATTCCCAAGAGGAAATTGACAATGATATATCAGCTTCCATTGATTTTTCTCCATCCCCACCCTTTTCGGTACCTTCGTTTCTCATAAACCCGGAAGATCAATTTGATTTCTCTCAAGTGCCACCTCAAATGCCATTAGCAGATCCTGTTGTTGAGGGATTTTCACAGTACCCTGCCGAACCTGTACCAACTCTTATGACAGCTCCATTAGCATCGGTTTTTGAAGAGGATTGCTTGTCTTCAGTGCCTTCTTATGTTCCTTTTAACCCTTCTTCTCCTCCTTGTTCATTTCTGGTTCCTCCTATGGGACCCTACATGCCTACTGGGCCTATAAATCCTGCTGCATTATCAGCTGACGGTACTGGAATTTTCACCAGCAGCATTCTTATGGCTTCTGAACTGCAACAGAAAGACTTGGAATATCAGGGAGACAGTGGTGGAATCTTCTGTCCAGATTCATTATCGAGGATTTTTAACCCCGAAGAGGTTCAGGCACTTAGTGCTGAGAGTCAGCAACTGGTGAGTGGGGGTGGGAACTCTACTTCGTTACCAACTGAGATTCCAATAGCCGAAGACCCAAATTTTAAAGTAGGCAAGCTCTCTGTTGAAGAGAGGAAAGAGAAGATCCACAGGTACATGAAGAAAAGGAATGAGAGGAACTTCACCAAGAAAATCAAGTATGCCTGCCGCAAAACACTTGCTGACAGCAGACCTCGAGTCCGAGGAAGATTTGCAAAGAACGATGATTTTGGAGAGACCCACAGATCTGCTGGAAGCAATCATGAAGACGATGAAGATGATGAAGTAGCTGTGAAAGAGGAAGAGGATTTGGCTGATTCCTCGGATATCTTTGCTCATATCAGTGGAGTGAACTCTTTCAAATGCAGCTACCCAATCCAGTCCTGGATTTGA

Protein Analysis

439

Amino Acids

47.87

Weight (kDa)

4.39

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 340 - 382 1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 4 cut(s) 324, 348, 360, 1093
AclWI GGATC 2 cut(s) 542, 1024
AcsI RAATTY 6 cut(s) 78, 110, 148, 190, 771, 985
AcuI CTGAAG 1 cut(s) 630
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 5 cut(s) 477, 575, 591, 766, 1040
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 41, 710, 889
AgsI TTSAA 4 cut(s) 110, 629, 1013, 1285
AhdI GACNNNNNGTC 1 cut(s) 1121
AjnI CCWGG 1 cut(s) 1307
AluBI AGCT 6 cut(s) 440, 608, 758, 1003, 1214, 1293
AluI AGCT 6 cut(s) 440, 608, 758, 1003, 1214, 1293
Alw26I GTCTC 3 cut(s) 131, 828, 1154
AlwI GGATC 2 cut(s) 542, 1024
AlwNI CAGNNNCTG 2 cut(s) 551, 922
Ama87I CYCGRG 1 cut(s) 1119
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 6 cut(s) 177, 326, 329, 746, 783, 1290
ApoI RAATTY 6 cut(s) 78, 110, 148, 190, 771, 985
Asp700I GAANNNNTTC 2 cut(s) 891, 1280
Asp718I GGTACC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 713, 731
AsuC2I CCSGG 2 cut(s) 122, 497
AsuHPI GGTGA 4 cut(s) 151, 769, 937, 1060
AvaI CYCGRG 1 cut(s) 1119
AvaII GGWCC 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 467, 500
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 3 cut(s) 636, 984, 1197
BbvI GCAGC 6 cut(s) 164, 313, 316, 733, 795, 1302
BccI CCATC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 1309
BcnI CCSGG 2 cut(s) 122, 497
BcoDI GTCTC 3 cut(s) 131, 828, 1154
BfaI CTAG 2 cut(s) 84, 306
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 1169
BisI GCNGC 7 cut(s) 178, 327, 330, 747, 784, 1093, 1291
BlsI GCNGC 7 cut(s) 179, 328, 331, 748, 785, 1094, 1292
Bme1390I CCNGG 3 cut(s) 122, 497, 1309
Bme18I GGWCC 1 cut(s) 713
BmeRI GACNNNNNGTC 1 cut(s) 1121
BmeT110I CYCGRG 1 cut(s) 1119
BmgT120I GGNCC 2 cut(s) 713, 731
BmiI GGNNCC 4 cut(s) 477, 702, 714, 715
BmrFI CCNGG 3 cut(s) 122, 497, 1309
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 626
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 3 cut(s) 636, 984, 1197
BpuEI CTTGAG 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 122, 497
BsaI GGTCTC 2 cut(s) 131, 1154
BsaJI CCNNGG 4 cut(s) 35, 153, 1126, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 710, 889
Bse1I ACTGG 4 cut(s) 733, 772, 927, 1303
BseBI CCWGG 1 cut(s) 1309
BseDI CCNNGG 4 cut(s) 35, 153, 1126, 1245
BseGI GGATG 3 cut(s) 79, 194, 458
BseLI CCNNNNNNNGG 3 cut(s) 41, 710, 889
BseMII CTCAG 2 cut(s) 900, 951
BseNI ACTGG 4 cut(s) 733, 772, 927, 1303
BseRI GAGGAG 1 cut(s) 672
BseXI GCAGC 6 cut(s) 164, 313, 316, 733, 795, 1302
BshFI GGCC 1 cut(s) 733
BshNI GGYRCC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 1119
BsiSI CCGG 2 cut(s) 122, 497
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 41, 710, 889
BsmAI GTCTC 3 cut(s) 131, 828, 1154
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 1 cut(s) 733
Bso31I GGTCTC 2 cut(s) 131, 1154
BsoBI CYCGRG 1 cut(s) 1119
Bsp143I GATC 4 cut(s) 502, 547, 1029, 1169
BspACI CCGC 4 cut(s) 324, 348, 360, 1093
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 2 cut(s) 901, 952
BspHI TCATGA 1 cut(s) 1186
BspLI GGNNCC 4 cut(s) 477, 702, 714, 715
BspPI GGATC 2 cut(s) 542, 1024
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 131, 1154
BsrI ACTGG 4 cut(s) 733, 772, 927, 1303
BssECI CCNNGG 4 cut(s) 35, 153, 1126, 1245
BssMI GATC 4 cut(s) 502, 547, 1029, 1169
Bst2UI CCWGG 1 cut(s) 1309
Bst4CI ACNGT 4 cut(s) 64, 573, 764, 839
Bst6I CTCTTC 4 cut(s) 624, 882, 1008, 1221
BstAPI GCANNNNNTGC 1 cut(s) 905
BstC8I GCNNGC 4 cut(s) 6, 334, 1001, 1090
BstDEI CTNAG 3 cut(s) 902, 909, 960
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 3 cut(s) 79, 194, 458
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 505, 550, 1032, 1172
BstMAI GTCTC 3 cut(s) 131, 828, 1154
BstMBI GATC 4 cut(s) 502, 547, 1029, 1169
BstMWI GCNNNNNNNGC 5 cut(s) 93, 614, 730, 755, 905
BstNI CCWGG 1 cut(s) 1309
BstNSI RCATGY 1 cut(s) 724
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 120, 495, 1307
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 6 cut(s) 164, 313, 316, 733, 795, 1302
BstV2I GAAGAC 3 cut(s) 636, 984, 1197
BstX2I RGATCY 3 cut(s) 547, 1029, 1169
BstYI RGATCY 3 cut(s) 547, 1029, 1169
BsuRI GGCC 1 cut(s) 733
BtsCI GGATG 3 cut(s) 79, 194, 458
BtsIMutI CAGTG 3 cut(s) 654, 844, 1273
Cac8I GCNNGC 4 cut(s) 6, 334, 1001, 1090
CaiI CAGNNNCTG 2 cut(s) 551, 922
CciI TCATGA 1 cut(s) 1186
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 713, 731
CseI GACGC 1 cut(s) 284
Csp6I GTAC 5 cut(s) 476, 574, 590, 765, 1039
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 4 cut(s) 12, 721, 1042, 1187
CviQI GTAC 5 cut(s) 476, 574, 590, 765, 1039
DdeI CTNAG 3 cut(s) 902, 909, 960
DpnI GATC 4 cut(s) 504, 549, 1031, 1171
DpnII GATC 4 cut(s) 502, 547, 1029, 1169
DraI TTTAAA 1 cut(s) 991
DraIII CACNNNGTG 1 cut(s) 905
DriI GACNNNNNGTC 1 cut(s) 1121
Eam1104I CTCTTC 4 cut(s) 624, 882, 1008, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 1121
EarI CTCTTC 4 cut(s) 624, 882, 1008, 1221
Eco31I GGTCTC 2 cut(s) 131, 1154
Eco32I GATATC 1 cut(s) 1252
Eco47I GGWCC 1 cut(s) 713
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 1119
Eco91I GGTNACC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 713
EcoO65I GGTNACC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 1307
EcoRV GATATC 1 cut(s) 1252
EcoT22I ATGCAT 1 cut(s) 17
FaeI CATG 4 cut(s) 15, 724, 1045, 1190
FaqI GGGAC 1 cut(s) 726
FatI CATG 4 cut(s) 11, 720, 1041, 1186
Fnu4HI GCNGC 7 cut(s) 178, 327, 330, 747, 784, 1093, 1291
FokI GGATG 3 cut(s) 86, 181, 445
Fsp4HI GCNGC 7 cut(s) 178, 327, 330, 747, 784, 1093, 1291
FspBI CTAG 2 cut(s) 84, 306
GlaI GCGC 1 cut(s) 97
GluI GCNGC 7 cut(s) 178, 327, 330, 747, 784, 1093, 1291
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 733
HapII CCGG 2 cut(s) 122, 497
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 15, 724, 1045, 1190
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 7 cut(s) 407, 846, 860, 913, 964, 1122, 1241
HpaII CCGG 2 cut(s) 122, 497
HphI GGTGA 4 cut(s) 151, 769, 937, 1060
Hpy166II GTNNAC 1 cut(s) 1276
Hpy188I TCNGA 5 cut(s) 36, 154, 802, 1127, 1249
Hpy188III TCNNGA 2 cut(s) 857, 1187
Hpy8I GTNNAC 1 cut(s) 1276
HpyAV CCTTC 4 cut(s) 64, 489, 663, 684
HpyCH4III ACNGT 4 cut(s) 64, 573, 764, 839
HpyCH4V TGCA 6 cut(s) 15, 203, 749, 808, 1139, 1290
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 614, 730, 755, 905
HpyF3I CTNAG 3 cut(s) 902, 909, 960
Hsp92II CATG 4 cut(s) 15, 724, 1045, 1190
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 713
KpnI GGTACC 1 cut(s) 479
Kzo9I GATC 4 cut(s) 502, 547, 1029, 1169
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 6 cut(s) 164, 313, 316, 733, 795, 1302
LweI GCATC 1 cut(s) 626
MaeI CTAG 2 cut(s) 84, 306
MaeIII GTNAC 2 cut(s) 157, 951
MalI GATC 4 cut(s) 504, 549, 1031, 1171
MboI GATC 4 cut(s) 502, 547, 1029, 1169
MflI RGATCY 3 cut(s) 547, 1029, 1169
MluCI AATT 9 cut(s) 78, 110, 148, 172, 190, 420, 506, 771, 985
MlyI GAGTC 2 cut(s) 922, 1131
Mph1103I ATGCAT 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 891, 1280
MseI TTAA 4 cut(s) 339, 669, 879, 990
MslI CAYNNNNRTG 2 cut(s) 791, 1266
MspA1I CMGCKG 2 cut(s) 326, 758
MspI CCGG 2 cut(s) 122, 497
MspR9I CCNGG 3 cut(s) 122, 497, 1309
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 1 cut(s) 1309
MwoI GCNNNNNNNGC 5 cut(s) 93, 614, 730, 755, 905
NciI CCSGG 2 cut(s) 122, 497
NdeII GATC 4 cut(s) 502, 547, 1029, 1169
NlaIII CATG 4 cut(s) 15, 724, 1045, 1190
NlaIV GGNNCC 4 cut(s) 477, 702, 714, 715
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 17
NspI RCATGY 1 cut(s) 724
PaeR7I CTCGAG 1 cut(s) 1119
PagI TCATGA 1 cut(s) 1186
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 2 cut(s) 891, 1280
PfeI GAWTC 5 cut(s) 407, 846, 860, 964, 1241
PfoI TCCNGGA 1 cut(s) 1307
PkrI GCNGC 7 cut(s) 179, 328, 331, 748, 785, 1094, 1292
PleI GAGTC 2 cut(s) 921, 1130
PpsI GAGTC 2 cut(s) 921, 1130
PpuMI RGGWCCY 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 1307
PspEI GGTNACC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 1307
PspN4I GGNNCC 4 cut(s) 477, 702, 714, 715
PspPI GGNCC 2 cut(s) 713, 731
PspPPI RGGWCCY 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 1119
PstNI CAGNNNCTG 2 cut(s) 551, 922
PsuI RGATCY 3 cut(s) 547, 1029, 1169
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 5 cut(s) 477, 575, 591, 766, 1040
RsaNI GTAC 5 cut(s) 476, 574, 590, 765, 1039
RseI CAYNNNNRTG 2 cut(s) 791, 1266
SaqAI TTAA 4 cut(s) 339, 669, 879, 990
SatI GCNGC 7 cut(s) 178, 327, 330, 747, 784, 1093, 1291
Sau3AI GATC 4 cut(s) 502, 547, 1029, 1169
Sau96I GGNCC 2 cut(s) 713, 731
SchI GAGTC 2 cut(s) 922, 1131
ScrFI CCNGG 3 cut(s) 122, 497, 1309
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 143
Sfr274I CTCGAG 1 cut(s) 1119
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 1119
SmiMI CAYNNNNRTG 2 cut(s) 791, 1266
SmlI CTYRAG 2 cut(s) 519, 1119
SmoI CTYRAG 2 cut(s) 519, 1119
Sse9I AATT 9 cut(s) 78, 110, 148, 172, 190, 420, 506, 771, 985
SsiI CCGC 4 cut(s) 324, 348, 360, 1093
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 84, 306
StyD4I CCNGG 3 cut(s) 120, 495, 1307
TaaI ACNGT 4 cut(s) 64, 573, 764, 839
TaqI TCGA 3 cut(s) 20, 869, 1120
TasI AATT 9 cut(s) 78, 110, 148, 172, 190, 420, 506, 771, 985
TauI GCSGC 1 cut(s) 1095
TfiI GAWTC 5 cut(s) 407, 846, 860, 964, 1241
Tru1I TTAA 4 cut(s) 339, 669, 879, 990
Tru9I TTAA 4 cut(s) 339, 669, 879, 990
TscAI CASTG 3 cut(s) 654, 844, 1273
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 6 cut(s) 177, 326, 329, 746, 783, 1290
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 8 cut(s) 90, 183, 681, 852, 1058, 1203, 1212, 1221
TspRI CASTG 3 cut(s) 654, 844, 1273
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 6 cut(s) 78, 110, 148, 190, 771, 985
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 1172, 1305
XhoI CTCGAG 1 cut(s) 1119
XmnI GAANNNNTTC 2 cut(s) 891, 1280
XspI CTAG 2 cut(s) 84, 306
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.