Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002534

Physical Location & Seq

Genomic Coordinates Reverse (-)

16071749 .. 16075576

Gene Structure 3828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTGGCGGGCATAGGAAATTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGCTTCATTCAGAAGGTGGAAGTTACTCACAGGAAAGTTGATTTAAACAGAGCCGGGGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAACTGGTATTGAAGCTGCAGAATATGCTGCAGAATTACAGAGGTTGGTTCGGTACTTGGGAGTGAGTAATGGGAATATGCAAGAAGGTTCACTTCGTTGTGATGTGAATATCTCTGTTCGACCAATTGGGCACATAGAGTTTGGGACAAAGGTGGAGATAAAAAATTTGAATTCATTTTCCTCTGTGAGCAGGGCAATAGATTATGAAATCTCCAGGCAGGTGCTTCTTCATAGTCAAGGCGAGGACAAAGAAATTGTACAGGAAACTCGTCTATGGGAAGAAGGAGCTCAGAAAACAATTACAATGAGAAAGAAAGAAGGACTTGCTGATTACCGATATTTCCCAGAACCAGACCTTCCAGGAGTTTTCCTCACCCAAGACTATGTTGATGGTATTCGTAATACATTGCCTGAACTTCCAGAAACGAAGCGTCGGAGATATGAAAAGATGGGTCTGAGTATGCAGGATGTTCTTTTTCTGGCCAACGACGTAAACGTTGCAGAGTTTTTTGATACTACTATTACAAAGGGTGCTGATGTGAAGCTAGCTACCAACTGGATAATGGGTGATATTGCTGCCTACATGAAAAATGAAAAATTGACTATCAATGAGATTAAGCTTAGCCCCAAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAAATAGGAAAAGAGATACTGTTTGAGCTTCTAGCCAAGGGTGGTACTGTGAAGGGGCTGATTGAAGAAAAAGATTTAGTACAGATAGTAGATCGAGCTGAGATTGAAAAAATGGTAGAAAAGGTGGTGTCGGAGAATCCAAAGCAGCTGGAACAATATCGTGGTGGAAAAACTAAACTGCAAGGTTATTTTGCTGGGCAGGTAATGAAGCTATCAAAAGGAAAAGCAAATCCAGGACTCCTAAACAAGATCCTTTTAGAGAAATTAAACGCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

373

Amino Acids

41.73

Weight (kDa)

6.89

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	29 - 182	2.6e-57	GatB/GatE catalytic domain
GatB_Yqey	PF02637	221 - 368	3.6e-51	GatB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48520 AT1G48520 AT1G48520
fragaria_vesca	FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030
malus_domestica	MD13G1223700.v1.1 MD16G1228500.v1.1
prunus_persica	Prupe.1G050600_v2.0.a1
pyrus_communis	pycom13g19770 pycom16g19100
rosa_chinensis	RchiOBHm_Chr4g0395911 RchiOBHm_Chr7g0203561
rosa_laevigata	RLG00000003518 RLG00000009588
rosa_multiflora	Rmu_sc0001103.1_g000011 Rmu_sc0007757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253680 Rroxscaffold_5G00340680
rosa_rugosa	Rorug03G0353500.1 Rorug03G0353600 Rorug07G0077000
rosa_samantha	Rh4AG062900 Rh4AG063900 Rh4AG066700 Rh4BG062600 Rh4CG068900 Rh4DG058900 Rh7AG206600 Rh7BG206100 Rh7BG337200 Rh7CG219200 Rh7DG213800
rosa_wichuraiana	Rw4G005170 Rw7G018030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	2 cut(s)	367, 1027
AccB1I	GGYRCC	1 cut(s)	121
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	1 cut(s)	1081
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	19, 322, 328
AfaI	GTAC	4 cut(s)	212, 417, 883, 918
AgsI	TTSAA	4 cut(s)	170, 328, 902, 944
AjnI	CCWGG	3 cut(s)	371, 517, 1069
Alw21I	GWGCWC	1 cut(s)	448
AlwI	GGATC	1 cut(s)	1081
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	63, 173, 185, 734, 982
ApoI	RAATTY	3 cut(s)	19, 322, 328
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	523, 737
AsuNHI	GCTAGC	1 cut(s)	703
BaeGI	GKGCMC	2 cut(s)	126, 291
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	5 cut(s)	50, 160, 172, 721, 994
BccI	CCATC	3 cut(s)	542, 601, 815
BciT130I	CCWGG	3 cut(s)	373, 519, 1071
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	2 cut(s)	704, 869
BfmI	CTRYAG	2 cut(s)	174, 186
BfuAI	ACCTGC	2 cut(s)	367, 1027
BisI	GCNGC	5 cut(s)	64, 174, 186, 735, 983
BlpI	GCTNAGC	1 cut(s)	779
BlsI	GCNGC	5 cut(s)	65, 175, 187, 736, 984
Bme1390I	CCNGG	4 cut(s)	118, 373, 519, 1071
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	4 cut(s)	118, 373, 519, 1071
BmsI	GCATC	1 cut(s)	42
BmtI	GCTAGC	1 cut(s)	707
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpmI	CTGGAG	1 cut(s)	355
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	117, 873
Bse1I	ACTGG	2 cut(s)	166, 719
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	3 cut(s)	373, 519, 1071
BseDI	CCNNGG	2 cut(s)	117, 873
BseGI	GGATG	2 cut(s)	57, 631
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	4 cut(s)	461, 605, 789, 927
BseNI	ACTGG	2 cut(s)	166, 719
BseSI	GKGCMC	2 cut(s)	126, 291
BseXI	GCAGC	5 cut(s)	50, 160, 172, 721, 994
BseYI	CCCAGC	1 cut(s)	1031
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	316, 838
BsmFI	GGGAC	2 cut(s)	316, 838
BsnI	GGCC	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	126, 291, 448
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	928, 1086
Bsp1720I	GCTNAGC	1 cut(s)	779
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	4 cut(s)	460, 606, 790, 928
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	2 cut(s)	178, 190
BspMI	ACCTGC	2 cut(s)	367, 1027
BspOI	GCTAGC	1 cut(s)	707
BspPI	GGATC	1 cut(s)	1081
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	166, 719
BssECI	CCNNGG	2 cut(s)	117, 873
BssMI	GATC	2 cut(s)	928, 1086
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	3 cut(s)	373, 519, 1071
Bst4CI	ACNGT	2 cut(s)	858, 886
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	10, 705
BstDEI	CTNAG	5 cut(s)	447, 614, 779, 798, 936
BstF5I	GGATG	2 cut(s)	57, 631
BstKTI	GATC	2 cut(s)	931, 1089
BstMBI	GATC	2 cut(s)	928, 1086
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	3 cut(s)	373, 519, 1071
BstSCI	CCNGG	4 cut(s)	116, 371, 517, 1069
BstSFI	CTRYAG	2 cut(s)	174, 186
BstSLI	GKGCMC	2 cut(s)	126, 291
BstV1I	GCAGC	5 cut(s)	50, 160, 172, 721, 994
BstX2I	RGATCY	1 cut(s)	1086
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	1086
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	2 cut(s)	57, 631
BveI	ACCTGC	2 cut(s)	367, 1027
Cac8I	GCNNGC	2 cut(s)	10, 705
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	4 cut(s)	211, 416, 882, 917
CviAII	CATG	2 cut(s)	42, 742
CviQI	GTAC	4 cut(s)	211, 416, 882, 917
DdeI	CTNAG	5 cut(s)	447, 614, 779, 798, 936
DpnI	GATC	2 cut(s)	930, 1088
DpnII	GATC	2 cut(s)	928, 1086
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	3 cut(s)	371, 517, 1069
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	2 cut(s)	45, 745
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 465, 497
FaqI	GGGAC	2 cut(s)	316, 838
FatI	CATG	2 cut(s)	41, 741
Fnu4HI	GCNGC	5 cut(s)	64, 174, 186, 735, 983
FokI	GGATG	2 cut(s)	64, 638
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	5 cut(s)	64, 174, 186, 735, 983
FspBI	CTAG	2 cut(s)	704, 869
GluI	GCNGC	5 cut(s)	64, 174, 186, 735, 983
GsaI	CCCAGC	1 cut(s)	1035
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	45, 745
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	2 cut(s)	973, 1074
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	523, 737
Hpy166II	GTNNAC	3 cut(s)	39, 248, 652
Hpy188I	TCNGA	6 cut(s)	75, 145, 450, 594, 615, 970
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	3 cut(s)	39, 248, 652
Hpy99I	CGWCG	2 cut(s)	594, 650
HpyAV	CCTTC	6 cut(s)	70, 236, 434, 470, 524, 883
HpyCH4III	ACNGT	2 cut(s)	858, 886
HpyCH4IV	ACGT	2 cut(s)	648, 654
HpyCH4V	TGCA	7 cut(s)	55, 176, 188, 238, 622, 659, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	5 cut(s)	447, 614, 779, 798, 936
HpySE526I	ACGT	2 cut(s)	648, 654
Hsp92II	CATG	2 cut(s)	45, 745
Kzo9I	GATC	2 cut(s)	928, 1086
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	5 cut(s)	50, 160, 172, 721, 994
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	704, 869
MaeII	ACGT	2 cut(s)	648, 654
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	930, 1088
MboI	GATC	2 cut(s)	928, 1086
MboII	GAAGA	4 cut(s)	58, 377, 449, 914
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	1086
MhlI	GDGCHC	3 cut(s)	126, 291, 448
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	9 cut(s)	19, 191, 282, 322, 328, 411, 456, 755, 1100
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	1068
MmeI	TCCRAC	2 cut(s)	572, 948
MnlI	CCTC	5 cut(s)	42, 192, 349, 394, 539
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	4 cut(s)	107, 774, 803, 1103
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	4 cut(s)	118, 373, 519, 1071
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	3 cut(s)	373, 519, 1071
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	2 cut(s)	928, 1086
NheI	GCTAGC	1 cut(s)	703
NlaIII	CATG	2 cut(s)	45, 745
NlaIV	GGNNCC	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	973
PfoI	TCCNGGA	2 cut(s)	517, 1069
PkrI	GCNGC	5 cut(s)	65, 175, 187, 736, 984
PleI	GAGTC	1 cut(s)	1068
PpsI	GAGTC	1 cut(s)	1068
Psp124BI	GAGCTC	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	3 cut(s)	371, 517, 1069
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	3 cut(s)	371, 517, 1069
PspN4I	GGNNCC	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	178, 190
PsuI	RGATCY	1 cut(s)	1086
PvuII	CAGCTG	1 cut(s)	985
RsaI	GTAC	4 cut(s)	212, 417, 883, 918
RsaNI	GTAC	4 cut(s)	211, 416, 882, 917
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	4 cut(s)	107, 774, 803, 1103
SatI	GCNGC	5 cut(s)	64, 174, 186, 735, 983
Sau3AI	GATC	2 cut(s)	928, 1086
SchI	GAGTC	1 cut(s)	1068
ScrFI	CCNGG	4 cut(s)	118, 373, 519, 1071
SduI	GDGCHC	3 cut(s)	126, 291, 448
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	174, 186
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	9 cut(s)	19, 191, 282, 322, 328, 411, 456, 755, 1100
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	704, 869
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	4 cut(s)	116, 371, 517, 1069
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	858, 886
TaiI	ACGT	2 cut(s)	651, 657
TaqI	TCGA	2 cut(s)	277, 931
TasI	AATT	9 cut(s)	19, 191, 282, 322, 328, 411, 456, 755, 1100
TatI	WGTACW	2 cut(s)	415, 916
TfiI	GAWTC	1 cut(s)	973
Tru1I	TTAA	4 cut(s)	107, 774, 803, 1103
Tru9I	TTAA	4 cut(s)	107, 774, 803, 1103
TseI	GCWGC	5 cut(s)	63, 173, 185, 734, 982
TspDTI	ATGAA	8 cut(s)	58, 321, 377, 378, 615, 758, 765, 1058
XapI	RAATTY	3 cut(s)	19, 322, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XspI	CTAG	2 cut(s)	704, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.