pycom16g20370

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002326
Physical Location & Seq
Reverse (-)
18107411 .. 18107776
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGATGATGGAGGACTCATACACAGTCAACAACAAGCCTCCCATCAAGGAGATCGCCCTTGCCCTCGCCCTCCTCGTCACCGGCACCCTCGGCCTTGTTATCGGCATCCTCATGGCCTATAACCATGTCGGCGGCGACAAAGCTCACGGGTTATTTTTTGCAATACTTGGTGGGATCTTGTTTCTTCCGAGATTCTATTACACACGGATTGCTTACTATGCGTATAAAGGGTACAAGGGCTTCTCTTTCTCCAACATTCCACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

90

Amino Acids

9.86

Weight (kDa)

9.26

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 15 - 88 8.7e-16 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 182
AfaI GTAC 1 cut(s) 233
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 1 cut(s) 182
AoxI GGCC 2 cut(s) 91, 114
AsuHPI GGTGA 1 cut(s) 70
BanI GGYRCC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BccI CCATC 1 cut(s) 50
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 93, 116
BshNI GGYRCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 2 cut(s) 93, 116
Bsp143I GATC 2 cut(s) 51, 174
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 93, 116
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 51, 174
Bst4CI ACNGT 1 cut(s) 25
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 54, 177
BstMBI GATC 2 cut(s) 51, 174
BstMWI GCNNNNNNNGC 2 cut(s) 90, 218
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 2 cut(s) 93, 116
BtsCI GGATG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 112, 125
CviJI RGCY 5 cut(s) 37, 93, 116, 143, 240
CviKI_1 RGCY 5 cut(s) 37, 93, 116, 143, 240
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 53, 176
DpnII GATC 2 cut(s) 51, 174
FaeI CATG 2 cut(s) 115, 128
FaiI YATR 6 cut(s) 19, 113, 120, 126, 219, 225
FatI CATG 2 cut(s) 111, 124
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 93, 116
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 115, 128
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 14, 192
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 218
Hsp92II CATG 2 cut(s) 115, 128
Kzo9I GATC 2 cut(s) 51, 174
LpnPI CCDG 1 cut(s) 94
LweI GCATC 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 53, 176
MboI GATC 2 cut(s) 51, 174
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 174
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 7 cut(s) 4, 48, 74, 80, 83, 98, 119
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 90, 218
NdeII GATC 2 cut(s) 51, 174
NlaIII CATG 2 cut(s) 115, 128
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 110
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 51, 174
SchI GAGTC 1 cut(s) 8
SetI ASST 1 cut(s) 145
SfaNI GCATC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 110
SsiI CCGC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 25
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 192
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.