Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

19849382 .. 19855412

Gene Structure 6031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAGATTACACCCTCGTCGCGAGAAAGTCCTGCTTCGGCTTGCCCACTGCATGCCCCTCATGCTTGACAGTCTACTTTTACCTCAAATTTGCCAAAGTTCCCTTCCGCTTGGATTTCAATCTTACCTACCCCGACTCTGACAAAATCCCTTACATTGAATCTGGCGAGTATGTGATCTATAATAATGAGAAGGGTGGCATTATTGAAAGGCTAAAAGAAGATCGCATCGCTGATTTGGACACTGAATTTCACACAATCCCAGAATGGATATCTACAAAGGCAATGATCAGCTCCTGGATTTCTGATGCCCTTACGTATGAACTCTGGGTGGGAACTGATGGTTGTTCTGCCAAAGAGATATATTATTCTGATCTCCCATGGCCAATTGGAAAGATTCTATTCTATAAGAAATTTTACACTGTAAAGCAGCAACTTGGGATTACTAATGACAGCGCTGAGAAAGTAGAAGAACATATATACAGGAGAGCCAGCCTTGCTTTTGGAGCTCTGTCACGTCGGTTGGAGGAACAAAAGTTTTTATTTGAAGACAGGCCATCAAGTTTGGACGCAGTCTTTCTTGGGCAGGCACTTATCACTCTTCAAGCATTGCCAGAAACATCGGTACTGCAGAGCAAGCTTTTAGAACATGAAAACCTTGTTAAGTATGCTGATAGGCTTAAGGTGGAGTTCGTGGACTCAGGTTTACCATCTTCGGTTCCAAACTTTCATAGAAACTCTTCATCAGCAGCTCCTAGAAGAGGTCCTTCAAACTCGAGTTCTAAGCCCAAGAGTAAACCCAAAAGGGAAGAGACAAAGGAGGAGAAAAGTTTTAAGAGAAGGGCCAGATATTTTTTAACAGCACAGCTGGTTTCGGTTGTACTTTTCGTCACTCTCCTAAGTCGAGTTGATGAGGCTGACGTCGAGGTTGATGATGATGGGTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

317

Amino Acids

36.15

Weight (kDa)

5.63

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	20 - 113	9.4e-18	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	166 - 227	2e-15	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	89, 248, 413
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	2 cut(s)	627, 882
AfeI	AGCGCT	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	761
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	6 cut(s)	121, 161, 209, 548, 605, 771
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	5 cut(s)	294, 509, 640, 752, 868
AluI	AGCT	5 cut(s)	294, 509, 640, 752, 868
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	806
AlwNI	CAGNNNCTG	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	775
Aor51HI	AGCGCT	1 cut(s)	457
AoxI	GGCC	3 cut(s)	383, 554, 843
ApeKI	GCWGC	2 cut(s)	430, 749
ApoI	RAATTY	3 cut(s)	89, 248, 413
Asp700I	GAANNNNTTC	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	764, 843
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	442, 761
BccI	CCATC	4 cut(s)	335, 565, 718, 932
BciT130I	CCWGG	1 cut(s)	298
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	459
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	2 cut(s)	431, 750
BlsI	GCNGC	2 cut(s)	432, 751
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	764
BmeT110I	CYCGRG	1 cut(s)	775
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	764, 843
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	2 cut(s)	237, 298
BpiI	GAAGAC	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	921
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse3DI	GCAATG	2 cut(s)	291, 608
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	2 cut(s)	291, 608
BseMII	CTCAG	2 cut(s)	450, 714
BseRI	GAGGAG	1 cut(s)	836
BseXI	GCAGC	2 cut(s)	442, 761
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	3 cut(s)	385, 556, 845
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	775
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	806
BsnI	GGCC	3 cut(s)	385, 556, 845
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	177, 223, 288, 373
Bsp19I	CCATGG	1 cut(s)	380
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	3 cut(s)	385, 556, 845
BspCNI	CTCAG	2 cut(s)	451, 713
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	720
BspMAI	CTGCAG	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	291, 608
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	4 cut(s)	177, 223, 288, 373
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	73, 424
Bst6I	CTCTTC	4 cut(s)	606, 745, 754, 804
BstACI	GRCGYC	1 cut(s)	921
BstAFI	CTTAAG	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	5 cut(s)	44, 55, 493, 588, 638
BstDEI	CTNAG	4 cut(s)	459, 700, 783, 899
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	180, 226, 291, 376
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	4 cut(s)	177, 223, 288, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 637
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	629
BstSNI	TACGTA	1 cut(s)	318
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	442, 761
BstV2I	GAAGAC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	385, 556, 845
BtgI	CCRYGG	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	518
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 243, 420
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	5 cut(s)	44, 55, 493, 588, 638
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	764, 843
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	626, 881
CviAII	CATG	4 cut(s)	54, 63, 381, 650
CviQI	GTAC	2 cut(s)	626, 881
DdeI	CTNAG	4 cut(s)	459, 700, 783, 899
DpnI	GATC	4 cut(s)	179, 225, 290, 375
DpnII	GATC	4 cut(s)	177, 223, 288, 373
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	4 cut(s)	606, 745, 754, 804
EarI	CTCTTC	4 cut(s)	606, 745, 754, 804
Ecl136II	GAGCTC	1 cut(s)	509
Eco105I	TACGTA	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	764
Eco47III	AGCGCT	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	4 cut(s)	57, 66, 384, 653
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 751, 783
FatI	CATG	4 cut(s)	53, 62, 380, 649
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	431, 750
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	431, 750
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	2 cut(s)	431, 750
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	385, 556, 845
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	4 cut(s)	57, 66, 384, 653
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	137, 161, 397, 698
Hpy166II	GTNNAC	4 cut(s)	76, 697, 707, 797
Hpy188I	TCNGA	3 cut(s)	142, 307, 373
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	4 cut(s)	76, 697, 707, 797
Hpy99I	CGWCG	3 cut(s)	23, 522, 926
HpyAV	CCTTC	4 cut(s)	115, 187, 777, 834
HpyCH4III	ACNGT	2 cut(s)	73, 424
HpyCH4IV	ACGT	3 cut(s)	317, 517, 921
HpyCH4V	TGCA	2 cut(s)	53, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 637
HpyF3I	CTNAG	4 cut(s)	459, 700, 783, 899
HpySE526I	ACGT	3 cut(s)	317, 517, 921
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	4 cut(s)	57, 66, 384, 653
HspAI	GCGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	177, 223, 288, 373
LmnI	GCTCC	3 cut(s)	299, 506, 757
Lsp1109I	GCAGC	2 cut(s)	442, 761
LweI	GCATC	2 cut(s)	237, 298
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	317, 517, 921
MaeIII	GTNAC	2 cut(s)	513, 889
MalI	GATC	4 cut(s)	179, 225, 290, 375
MboI	GATC	4 cut(s)	177, 223, 288, 373
MboII	GAAGA	9 cut(s)	17, 233, 482, 560, 593, 705, 732, 771, 821
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	4 cut(s)	89, 248, 387, 413
MluNI	TGGCCA	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	131, 692
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	8 cut(s)	26, 70, 95, 520, 755, 814, 907, 919
Mox20I	TGGCCA	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	4 cut(s)	663, 681, 834, 857
Msp20I	TGGCCA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	868
MspCI	CTTAAG	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	298
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 637
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	177, 223, 288, 373
NlaIII	CATG	4 cut(s)	57, 66, 384, 653
NlaIV	GGNNCC	1 cut(s)	720
NmuCI	GTSAC	2 cut(s)	513, 889
NruI	TCGCGA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	775
PdmI	GAANNNNTTC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	161, 397
PflFI	GACNNNGTC	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	432, 751
PleI	GAGTC	2 cut(s)	131, 692
PpsI	GAGTC	2 cut(s)	131, 692
Ppu21I	YACGTR	1 cut(s)	318
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	2 cut(s)	764, 843
PspPPI	RGGWCCY	1 cut(s)	764
PspXI	VCTCGAGB	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	633
PstNI	CAGNNNCTG	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	868
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	2 cut(s)	627, 882
RsaNI	GTAC	2 cut(s)	626, 881
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	663, 681, 834, 857
SatI	GCNGC	2 cut(s)	431, 750
Sau3AI	GATC	4 cut(s)	177, 223, 288, 373
Sau96I	GGNCC	2 cut(s)	764, 843
SchI	GAGTC	2 cut(s)	131, 692
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	237, 298
SfcI	CTRYAG	1 cut(s)	629
Sfr274I	CTCGAG	1 cut(s)	775
SinI	GGWCC	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	775
SmlI	CTYRAG	2 cut(s)	680, 775
SmoI	CTYRAG	2 cut(s)	680, 775
SnaBI	TACGTA	1 cut(s)	318
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	89, 248, 387, 413
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	756
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	73, 424
TaiI	ACGT	3 cut(s)	320, 520, 924
TaqI	TCGA	3 cut(s)	776, 904, 924
TasI	AATT	4 cut(s)	89, 248, 387, 413
TatI	WGTACW	1 cut(s)	880
TfiI	GAWTC	2 cut(s)	161, 397
Tru1I	TTAA	4 cut(s)	663, 681, 834, 857
Tru9I	TTAA	4 cut(s)	663, 681, 834, 857
TscAI	CASTG	3 cut(s)	55, 250, 427
TseFI	GTSAC	2 cut(s)	513, 889
TseI	GCWGC	2 cut(s)	430, 749
Tsp45I	GTSAC	2 cut(s)	513, 889
TspDTI	ATGAA	4 cut(s)	336, 666, 719, 732
TspRI	CASTG	3 cut(s)	55, 250, 427
Tth111I	GACNNNGTC	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	764
XagI	CCTNNNNNAGG	1 cut(s)	759
XapI	RAATTY	3 cut(s)	89, 248, 413
XceI	RCATGY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	739
XspI	CTAG	1 cut(s)	756
ZraI	GACGTC	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.