Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Reverse (-)

27332996 .. 27338421

Gene Structure 5426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGAATCAAGCTTTGATATTCAAGTATCTCAAGGCAGGACTCCCTGTTCCTTCTGAACTCCTCGCCCCTATTCGCACCAGTTTCAATCTCATTTCCCCCAATTTCTTACGCCACCACCCCACCTTGGCTTCCTATAGCGGGAAGAAGATGGACCCGGAGCCAGGGCGGTGCCGGAGGACGGATGGGAAGAAATGGAGGTGCTCCAAAGATGCACATCCGGACTCCAAGTATTGCGAGCGGCACATGAACCGAGGTCGTTATCGTTCAAGAAAGCTTGTGGAATCACAAACTTCCTCTCAATCTTTGTCGACTGTGACGTCAGACAGTGTGATTGGGATCTGCAGCCACAGTGGGAGCTTCCAGAGCATGCCCTTACACTCAATGGGAAATAGTGGTGCTCTATGCTTTGGAAGCAATGCATCTGAGTTGAAGATGGAGGGTATACCATATGGGGTATCTAACAGGGGAACCAGGGTAGCAAGAGATCAGGATCAGAAGAACACAATTTCGTGTCAGAAGCTACGAGTGCGAGGTGTCTTCGGGCAGACAGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

9.9

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	2 - 26	3.2e-08	QLQ
WRC	PF08879	53 - 95	1.6e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	311, 445
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	3 cut(s)	141, 169, 241
AclWI	GGATC	2 cut(s)	347, 501
AcyI	GRCGYC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	127, 141, 164, 181
AgsI	TTSAA	4 cut(s)	25, 88, 270, 433
AjnI	CCWGG	2 cut(s)	163, 473
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	14, 277, 360, 523
AluI	AGCT	4 cut(s)	14, 277, 360, 523
Alw21I	GWGCWC	2 cut(s)	206, 403
AlwI	GGATC	2 cut(s)	347, 501
Aor13HI	TCCGGA	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	206, 403
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	145, 179, 430
BciT130I	CCWGG	2 cut(s)	165, 475
BcnI	CCSGG	1 cut(s)	158
BfmI	CTRYAG	2 cut(s)	136, 343
BisI	GCNGC	2 cut(s)	242, 346
BlsI	GCNGC	2 cut(s)	243, 347
Bme1390I	CCNGG	3 cut(s)	158, 165, 475
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	4 cut(s)	156, 162, 173, 472
BmrFI	CCNGG	3 cut(s)	158, 165, 475
BmsI	GCATC	2 cut(s)	202, 431
BpiI	GAAGAC	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	158
BsaBI	GATNNNNATC	3 cut(s)	216, 338, 492
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	126, 164, 253, 474
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 141, 164, 181
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	3 cut(s)	216, 338, 492
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	165, 475
BseDI	CCNNGG	4 cut(s)	126, 164, 253, 474
BseGI	GGATG	2 cut(s)	190, 217
BseJI	GATNNNNATC	3 cut(s)	216, 338, 492
BseLI	CCNNNNNNNGG	4 cut(s)	127, 141, 164, 181
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	206, 403
BsiSI	CCGG	3 cut(s)	158, 175, 221
BslI	CCNNNNNNNGG	4 cut(s)	127, 141, 164, 181
Bsp1286I	GDGCHC	2 cut(s)	206, 403
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	339, 487, 493
BspACI	CCGC	3 cut(s)	141, 169, 241
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	156, 162, 173, 472
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	2 cut(s)	347, 501
BspT107I	GGYRCC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	126, 164, 253, 474
BssMI	GATC	3 cut(s)	339, 487, 493
BssNAI	GTATAC	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	165, 475
Bst4CI	ACNGT	4 cut(s)	316, 329, 353, 553
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	239, 371
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	190, 217
BstKTI	GATC	3 cut(s)	342, 490, 496
BstMBI	GATC	3 cut(s)	339, 487, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 414, 529
BstNI	CCWGG	2 cut(s)	165, 475
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	156, 163, 473
BstSFI	CTRYAG	2 cut(s)	136, 343
BstV1I	GCAGC	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BstZ17I	GTATAC	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	190, 217
BtsIMutI	CAGTG	2 cut(s)	334, 358
Cac8I	GCNNGC	2 cut(s)	239, 371
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	2 cut(s)	247, 370
CviJI	RGCY	7 cut(s)	14, 131, 163, 277, 348, 360, 523
CviKI_1	RGCY	7 cut(s)	14, 131, 163, 277, 348, 360, 523
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	341, 489, 495
DpnII	GATC	3 cut(s)	339, 487, 493
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	163, 473
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	250, 373
FaiI	YATR	7 cut(s)	138, 248, 371, 406, 446, 451, 453
FatI	CATG	2 cut(s)	246, 369
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	451
FblI	GTMKAC	2 cut(s)	311, 445
Fnu4HI	GCNGC	2 cut(s)	242, 346
FokI	GGATG	2 cut(s)	197, 204
Fsp4HI	GCNGC	2 cut(s)	242, 346
GluI	GCNGC	2 cut(s)	242, 346
HapII	CCGG	3 cut(s)	158, 175, 221
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	250, 373
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	12, 275
HinfI	GANTC	4 cut(s)	7, 42, 224, 284
HpaII	CCGG	3 cut(s)	158, 175, 221
Hpy166II	GTNNAC	2 cut(s)	312, 446
Hpy188I	TCNGA	5 cut(s)	58, 325, 427, 498, 519
Hpy188III	TCNNGA	4 cut(s)	221, 270, 364, 491
Hpy8I	GTNNAC	2 cut(s)	312, 446
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	4 cut(s)	316, 329, 353, 553
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	215, 345, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 414, 529
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	2 cut(s)	250, 373
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	339, 487, 493
LmnI	GCTCC	3 cut(s)	160, 209, 357
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	2 cut(s)	202, 431
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	341, 489, 495
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	339, 487, 493
MboII	GAAGA	6 cut(s)	157, 160, 202, 445, 511, 532
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	206, 403
MluCI	AATT	2 cut(s)	103, 507
MlyI	GAGTC	2 cut(s)	36, 218
MnlI	CCTC	7 cut(s)	74, 171, 192, 248, 307, 433, 527
Mph1103I	ATGCAT	1 cut(s)	424
MroI	TCCGGA	1 cut(s)	220
MspI	CCGG	3 cut(s)	158, 175, 221
MspR9I	CCNGG	3 cut(s)	158, 165, 475
MvaI	CCWGG	2 cut(s)	165, 475
MwoI	GCNNNNNNNGC	3 cut(s)	366, 414, 529
NciI	CCSGG	1 cut(s)	158
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	3 cut(s)	339, 487, 493
NlaIII	CATG	2 cut(s)	250, 373
NlaIV	GGNNCC	4 cut(s)	156, 162, 173, 472
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	7, 284
PkrI	GCNGC	2 cut(s)	243, 347
PleI	GAGTC	2 cut(s)	36, 218
PpsI	GAGTC	2 cut(s)	36, 218
Psp6I	CCWGG	2 cut(s)	163, 473
PspGI	CCWGG	2 cut(s)	163, 473
PspN4I	GGNNCC	4 cut(s)	156, 162, 173, 472
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	310
SatI	GCNGC	2 cut(s)	242, 346
Sau3AI	GATC	3 cut(s)	339, 487, 493
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	36, 218
ScrFI	CCNGG	3 cut(s)	158, 165, 475
SduI	GDGCHC	2 cut(s)	206, 403
SetI	ASST	9 cut(s)	16, 128, 203, 259, 279, 323, 362, 525, 538
SfaNI	GCATC	2 cut(s)	202, 431
SfcI	CTRYAG	2 cut(s)	136, 343
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	103, 507
SsiI	CCGC	3 cut(s)	141, 169, 241
StyD4I	CCNGG	3 cut(s)	156, 163, 473
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	316, 329, 353, 553
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	103, 507
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	7, 284
TscAI	CASTG	2 cut(s)	334, 358
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	334, 358
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	311, 445
ZraI	GACGTC	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.