Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005805

Physical Location & Seq

Genomic Coordinates Forward (+)

3874035 .. 3874758

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCTCCTGCAAAACCCTAGTCCGTACTTCTCTCTCCTCAATCACCTCCACCCTCCGAACCAATCGACCCACCGTCTCTCTCCTCCTCTCCCCCTCCCTCCGCTTCCTCCCAAGCAAGCGCTCAGGCTTGCTCCTTACAATGTTCCTTCGCGGTCGTACGCTTCAATTTCATCCGAAGCCGCCGCCGCAAATTTCACAGACGAAGCTTCACTCCGCAAACTCAACCCTAGAACCGCCGGAGAACCCGACGCAGGACACCGTGGAGGAGCTTCTGAGGAAGAAAAACGACGTCGCGCGCCTCATGAAAATGAAACGCCGCCACAAGTCCGCGCACCAAATCGGCGGTCGGTGGTTCCCGTATCTCGACAAGTTCAGCTGCGGTGAAGGGGCTTTTCTCAACAGCGGTGAGGTGCTTGAAGCGGTGGATCCGTACATAATGGATGTGAGGAAGGAGAAGTTTAGGAAAGTGGTGAAGAATCGGAGCTACGGGGTGTGTCTGGTGGTTGAAGGATTGGGAGATTTCGGCAATGTATCGGCGGCGTTTCGGTCTGCGGATGCGCTCGGGTTTCAGTCGGTTCATGTGGTATCCTGCGACTCCAAAAGGTGCAACGGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

10.02

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15390 AT5G15390
fragaria_vesca	FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560 FvH4_6g47560
malus_domestica	MD07G1179900.v1.1 MD11G1144500.v1.1 MD17G1055800.v1.1
prunus_persica	Prupe.3G259900_v2.0.a1
pyrus_communis	pycom17g05470
rosa_chinensis	RchiOBHm_Chr2g0166661
rosa_laevigata	RLG00000021639
rosa_multiflora	Rmu_co8387427.1_g000001 Rmu_sc0005279.1_g000001 Rmu_sc0016352.1_g000001 Rmu_sc0032184.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084320 Rroxscaffold_2G00084630
rosa_rugosa	Rorug02G0524700 Rorug02G0524800
rosa_samantha	Rh2AG591100 Rh2BG602900 Rh2CG573800 Rh2DG613700 Rh4DG034600
rosa_wichuraiana	Rw2G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccII	CGCG	4 cut(s)	153, 296, 298, 332
AclWI	GGATC	2 cut(s)	422, 435
AcsI	RAATTY	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	28, 160, 434
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	167, 419, 509
AhdI	GACNNNNNGTC	1 cut(s)	74
AluBI	AGCT	5 cut(s)	6, 208, 271, 378, 486
AluI	AGCT	5 cut(s)	6, 208, 271, 378, 486
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	422, 435
Ama87I	CYCGRG	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	3 cut(s)	38, 331, 363
AspLEI	GCGC	5 cut(s)	123, 298, 300, 334, 562
AsuHPI	GGTGA	4 cut(s)	37, 395, 419, 484
AvaI	CYCGRG	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	20, 230
BfoI	RGCGCY	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	6 cut(s)	182, 185, 188, 319, 379, 540
BlsI	GCNGC	6 cut(s)	183, 186, 189, 320, 380, 541
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	356, 429
BmsI	GCATC	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	172, 448, 562
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	138, 266
BsePI	GCGCGC	1 cut(s)	296
BseRI	GAGGAG	4 cut(s)	28, 74, 77, 281
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	4 cut(s)	153, 296, 298, 332
Bsh1285I	CGRYCG	2 cut(s)	157, 349
BsiEI	CGRYCG	2 cut(s)	157, 349
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	239
BsiWI	CGTACG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	137, 267
BspFNI	CGCG	4 cut(s)	153, 296, 298, 332
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	356, 429
BspPI	GGATC	2 cut(s)	422, 435
BsrDI	GCAATG	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	261
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	76, 262
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	119, 131, 298
BstDEI	CTNAG	2 cut(s)	124, 275
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	172, 448, 562
BstFNI	CGCG	4 cut(s)	153, 296, 298, 332
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	5 cut(s)	123, 298, 300, 334, 562
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	427
BstMCI	CGRYCG	2 cut(s)	157, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstUI	CGCG	4 cut(s)	153, 296, 298, 332
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	172, 448, 562
Cac8I	GCNNGC	3 cut(s)	119, 131, 298
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	5 cut(s)	123, 298, 300, 334, 562
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	27, 159, 433
CviAII	CATG	2 cut(s)	304, 581
CviJI	RGCY	8 cut(s)	6, 129, 181, 208, 271, 378, 392, 486
CviKI_1	RGCY	8 cut(s)	6, 129, 181, 208, 271, 378, 392, 486
CviQI	GTAC	3 cut(s)	27, 159, 433
DdeI	CTNAG	2 cut(s)	124, 275
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DriI	GACNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47III	AGCGCT	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	307, 584
FaiI	YATR	3 cut(s)	305, 437, 582
FatI	CATG	2 cut(s)	303, 580
Fnu4HI	GCNGC	6 cut(s)	182, 185, 188, 319, 379, 540
FokI	GGATG	3 cut(s)	159, 455, 569
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	182, 185, 188, 319, 379, 540
FspBI	CTAG	2 cut(s)	20, 230
GlaI	GCGC	5 cut(s)	122, 297, 299, 333, 561
GluI	GCNGC	6 cut(s)	182, 185, 188, 319, 379, 540
HaeII	RGCGCY	1 cut(s)	124
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	5 cut(s)	123, 298, 300, 334, 562
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	307, 584
Hin6I	GCGC	5 cut(s)	121, 296, 298, 332, 560
HinP1I	GCGC	5 cut(s)	121, 296, 298, 332, 560
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	478, 596
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	37, 395, 419, 484
Hpy188I	TCNGA	4 cut(s)	59, 177, 276, 483
Hpy188III	TCNNGA	2 cut(s)	304, 365
Hpy99I	CGWCG	3 cut(s)	253, 293, 296
HpyAV	CCTTC	4 cut(s)	158, 380, 445, 503
HpyCH4III	ACNGT	2 cut(s)	76, 262
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	12, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	124, 275
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	307, 584
HspAI	GCGC	5 cut(s)	121, 296, 298, 332, 560
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	4 cut(s)	11, 138, 268, 483
LpnPI	CCDG	6 cut(s)	22, 111, 239, 252, 485, 604
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	20, 230
MaeII	ACGT	1 cut(s)	291
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	2 cut(s)	292, 487
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	167, 192
MlyI	GAGTC	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	378, 405
MspI	CCGG	1 cut(s)	239
MvnI	CGCG	4 cut(s)	153, 296, 298, 332
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	307, 584
NlaIV	GGNNCC	2 cut(s)	356, 429
PagI	TCATGA	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	478
Pfl23II	CGTACG	1 cut(s)	158
PkrI	GCNGC	6 cut(s)	183, 186, 189, 320, 380, 541
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	8
PspLI	CGTACG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	356, 429
PsuI	RGATCY	1 cut(s)	427
PteI	GCGCGC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	3 cut(s)	28, 160, 434
RsaNI	GTAC	3 cut(s)	27, 159, 433
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	6 cut(s)	182, 185, 188, 319, 379, 540
Sau3AI	GATC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	8, 50, 210, 273, 294, 380, 414, 488, 608
SfaNI	GCATC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	167, 192
SspMI	CTAG	2 cut(s)	20, 230
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	76, 262
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	67, 366
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	2 cut(s)	167, 192
TauI	GCSGC	5 cut(s)	184, 187, 190, 321, 542
TfiI	GAWTC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	4 cut(s)	161, 320, 326, 569
TspGWI	ACGGA	2 cut(s)	14, 420
XapI	RAATTY	1 cut(s)	192
XspI	CTAG	2 cut(s)	20, 230
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.