pycom17g05680
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007524
Physical Location & Seq
Reverse (-)
4027323 .. 4028117
795 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGGTACCTGTATCATTTCTATGCCTGATCTTGAAGCATCTGAAAACTATTTATGTGAAGATATGGGAGCTAGAAACCACTGTATGTGTGCTGATGCAGGTTCCGTTAGATGTGTGAGACAGCATGTCCTGGAAGCAAGAGAGAAATTAAGGGAAGACCTTGGAGAGCGCCTATTTGAAGAGTTGGGATTTTATGAAATGGGAGAGGCGGTTGCAGATAAATGGACTAAAGATGAAGAACTTGCCTTCCACGATGCCATCCGTTCTAACCCTGCATCATTGGGTAAGAACTTCTGGCACCATCTTTCAGTGGCTTTTCCTTTGCGACCGCATAAAGACCTTGTCAGCTATTATTTCAATGTTTTCATGCTCCGTCAGCGTGCCGAGCAGAACAGGTTTGACCCTCTAAACATTGATAGCGATGATGATGAGTGGCAAAAATGTGAACTTGGAGTGGTCAATGATGATGAGGACGCATTGGTGGAATCTCCTGTAAATCTAGATGCTCCTGCCTATAATCAGGTAGAACATTTTGACAGTTTTAATGAACAAATTGAGGATGCTGATGACGTAGATGGTTGTAATGATAATGCCGATGTCGTTGGTTGTGCTGGAATTACGGACGAGGATGCAGGCGATATAGATGATGGCCCTGAATCTCATACTGAGAATCCCCTTGGTGATTGTGGTGCTACTGAAACTCGGGTTCTGGATAAAACTCCTAGCAGTAACAGAGAGGATTATGATATTGAAGATGATTCTTGCACATCATATGAGCATCAGCAAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.7

Weight (kDa)

4.16

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 2 cut(s) 5, 297
AciI CCGC 2 cut(s) 209, 329
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 4 cut(s) 35, 179, 358, 752
AhdI GACNNNNNGTC 1 cut(s) 125
AjnI CCWGG 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 2 cut(s) 71, 348
AluI AGCT 2 cut(s) 71, 348
Alw26I GTCTC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 702
AoxI GGCC 1 cut(s) 649
Asp718I GGTACC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 702
BanI GGYRCC 2 cut(s) 5, 297
BbsI GAAGAC 1 cut(s) 162
BccI CCATC 4 cut(s) 266, 309, 569, 641
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 3 cut(s) 72, 500, 723
BfoI RGCGCY 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 702
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 3 cut(s) 7, 103, 299
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 8 cut(s) 47, 85, 244, 284, 493, 550, 619, 787
BpiI GAAGAC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 160, 676
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 160, 676
BseGI GGATG 3 cut(s) 258, 565, 634
BseMII CTCAG 1 cut(s) 657
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 651
BshNI GGYRCC 2 cut(s) 5, 297
BsiEI CGRYCG 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 702
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 702
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 2 cut(s) 209, 329
BspANI GGCC 1 cut(s) 651
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 7, 103, 299
BspMI ACCTGC 1 cut(s) 89
BspT107I GGYRCC 2 cut(s) 5, 297
BssECI CCNNGG 2 cut(s) 160, 676
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 160, 676
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 83, 539
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 381, 634
BstDEI CTNAG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 258, 565, 634
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 376, 385
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 258, 565, 634
BtsIMutI CAGTG 2 cut(s) 79, 315
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 381, 634
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 650
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 125, 367
CviJI RGCY 4 cut(s) 71, 314, 348, 651
CviKI_1 RGCY 4 cut(s) 71, 314, 348, 651
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 666
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 174
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 160, 676
Eco88I CYCGRG 1 cut(s) 702
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 160, 676
ErhI CCWWGG 2 cut(s) 160, 676
FaeI CATG 2 cut(s) 128, 370
FatI CATG 2 cut(s) 124, 366
FauNDI CATATG 1 cut(s) 772
FokI GGATG 3 cut(s) 245, 572, 641
FspBI CTAG 3 cut(s) 72, 500, 723
GlaI GCGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 651
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 128, 370
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 4 cut(s) 485, 656, 670, 758
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 32, 500, 710
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 83, 539
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 5 cut(s) 98, 215, 275, 632, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 385
HpyF3I CTNAG 1 cut(s) 666
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 2 cut(s) 128, 370
HspAI GCGC 1 cut(s) 169
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 3 cut(s) 68, 375, 511
LweI GCATC 8 cut(s) 47, 85, 244, 284, 493, 550, 619, 787
MaeI CTAG 3 cut(s) 72, 500, 723
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 728
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 5 cut(s) 71, 167, 191, 248, 764
MluCI AATT 3 cut(s) 146, 552, 615
MnlI CCTC 6 cut(s) 199, 414, 463, 550, 619, 730
MseI TTAA 2 cut(s) 149, 543
MslI CAYNNNNRTG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 376, 385
NdeI CATATG 1 cut(s) 772
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 128, 370
NlaIV GGNNCC 3 cut(s) 7, 103, 299
NmeAIII GCCGAG 1 cut(s) 409
NspI RCATGY 1 cut(s) 128
PfeI GAWTC 4 cut(s) 485, 656, 670, 758
PflFI GACNNNGTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 7, 103, 299
PspPI GGNCC 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 149, 543
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 131
SetI ASST 9 cut(s) 11, 73, 103, 162, 342, 350, 398, 525, 573
SfaNI GCATC 8 cut(s) 47, 85, 244, 284, 493, 550, 619, 787
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 146, 552, 615
SsiI CCGC 2 cut(s) 209, 329
SspMI CTAG 3 cut(s) 72, 500, 723
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 160, 676
TaaI ACNGT 2 cut(s) 83, 539
TaiI ACGT 1 cut(s) 573
TasI AATT 3 cut(s) 146, 552, 615
TfiI GAWTC 4 cut(s) 485, 656, 670, 758
Tru1I TTAA 2 cut(s) 149, 543
Tru9I TTAA 2 cut(s) 149, 543
TscAI CASTG 2 cut(s) 86, 315
TspDTI ATGAA 4 cut(s) 210, 249, 355, 561
TspGWI ACGGA 4 cut(s) 94, 251, 362, 635
TspRI CASTG 2 cut(s) 86, 315
Tth111I GACNNNGTC 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 128
XspI CTAG 3 cut(s) 72, 500, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.