pycom17g07560

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009729
Physical Location & Seq
Reverse (-)
5503535 .. 5505202
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGAAAGGTGACTACCACAGGTACCTTGCAGAGTTTAAGACTGGAGGCGAGAGAAAGGAAGCAGCTGAGAGTACTTTGTTGGCTTACAAGTCTGCTCAGGACATTGCCCTCGCTGAGCTGGCTCCAACCCACCCAATAAGGCTTGGACTTGCACTCAACTTCTCAGTTTTCTACTATGAAATCCTTAATTCACCCGATCGTGCTTGCAATCTGGCAAAACAGGCTTTTGATGAGGCTATTTCTGAACTTGACACATTGGGTGAGGAATCCTACAAGGATAGCACTTTGATCATGCAGCTTCTCCGAGACAATCTGACACTCTGGACTTCTGATATCACGGATGATGCCGGGGATGAAATCAAGGAAGCATCAAAGCGCGAATCAAGTGAAGCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000166 GO:0001505 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004620 GO:0004623 GO:0004857 GO:0004860 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006469 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006587 GO:0006588 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008144 GO:0008150 GO:0008152 GO:0008426 GO:0009058 GO:0009072 GO:0009308 GO:0009506 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010563 GO:0010605 GO:0012505 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0017076 GO:0018130 GO:0018958 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0019887 GO:0030054 GO:0030234 GO:0030291 GO:0030312 GO:0030554 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031570 GO:0032268 GO:0032269 GO:0032553 GO:0032555 GO:0032559 GO:0032768 GO:0032770 GO:0033554 GO:0033673 GO:0034641 GO:0035639 GO:0036094 GO:0042133 GO:0042136 GO:0042221 GO:0042325 GO:0042326 GO:0042427 GO:0042428 GO:0042430 GO:0042435 GO:0043085 GO:0043086 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043549 GO:0044092 GO:0044093 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045786 GO:0045859 GO:0045936 GO:0046189 GO:0046483 GO:0046686 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051341 GO:0051348 GO:0051353 GO:0051716 GO:0051726 GO:0052689 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0097159 GO:0097164 GO:0097367 GO:0098772 GO:1901160 GO:1901162 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901615 GO:1901617
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04142 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04142 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

4.54

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 1 - 109 8.5e-54 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccII CGCG 1 cut(s) 378
AfaI GTAC 2 cut(s) 23, 73
AluBI AGCT 3 cut(s) 65, 118, 298
AluI AGCT 3 cut(s) 65, 118, 298
Alw26I GTCTC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 62, 295
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 3 cut(s) 20, 183, 272
BanI GGYRCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 74, 307
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 300
BisI GCNGC 2 cut(s) 63, 296
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 2 cut(s) 64, 297
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 23, 123
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 334, 377
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 346, 358
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 4 cut(s) 57, 105, 110, 177
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 74, 307
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 196, 288
Bsp1720I GCTNAGC 1 cut(s) 114
BspCNI CTCAG 4 cut(s) 58, 106, 109, 176
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 23, 123
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 196, 288
Bst4CI ACNGT 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 120, 205
BstDEI CTNAG 4 cut(s) 66, 96, 114, 163
BstF5I GGATG 2 cut(s) 346, 358
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 199, 291
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 196, 288
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 119, 221
BstSCI CCNGG 1 cut(s) 347
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 74, 307
BtsCI GGATG 2 cut(s) 346, 358
Cac8I GCNNGC 2 cut(s) 120, 205
CfoI GCGC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 22, 72
CviAII CATG 1 cut(s) 292
CviJI RGCY 8 cut(s) 65, 83, 118, 122, 142, 224, 236, 298
CviKI_1 RGCY 8 cut(s) 65, 83, 118, 122, 142, 224, 236, 298
CviQI GTAC 2 cut(s) 22, 72
DdeI CTNAG 4 cut(s) 66, 96, 114, 163
DpnI GATC 2 cut(s) 198, 290
DpnII GATC 2 cut(s) 196, 288
Eco32I GATATC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 334
FaeI CATG 1 cut(s) 295
FaiI YATR 2 cut(s) 177, 293
FatI CATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 63, 296
FokI GGATG 2 cut(s) 353, 365
Fsp4HI GCNGC 2 cut(s) 63, 296
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 63, 296
GsuI CTGGAG 1 cut(s) 63
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 2 cut(s) 266, 380
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 20, 183, 272
Hpy188I TCNGA 4 cut(s) 244, 305, 315, 331
Hpy188III TCNNGA 2 cut(s) 98, 322
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 4 cut(s) 29, 152, 207, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 221
HpyF3I CTNAG 4 cut(s) 66, 96, 114, 163
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 376
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 196, 288
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 4, 27, 83, 104, 197, 206, 307, 361
Lsp1109I GCAGC 2 cut(s) 74, 307
LweI GCATC 2 cut(s) 334, 377
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 198, 290
MboI GATC 2 cut(s) 196, 288
MluCI AATT 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 38, 119, 226, 256
MseI TTAA 2 cut(s) 36, 186
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 119, 221
NciI CCSGG 1 cut(s) 349
NdeII GATC 2 cut(s) 196, 288
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 23, 123
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 266, 380
PkrI GCNGC 2 cut(s) 64, 297
Ple19I CGATCG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 23, 123
PvuI CGATCG 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 23, 73
RsaNI GTAC 2 cut(s) 22, 72
SaqAI TTAA 2 cut(s) 36, 186
SatI GCNGC 2 cut(s) 63, 296
Sau3AI GATC 2 cut(s) 196, 288
ScaI AGTACT 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 349
SetI ASST 6 cut(s) 10, 23, 27, 67, 120, 300
SfaNI GCATC 2 cut(s) 334, 377
Sse9I AATT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 396
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 266, 380
Tru1I TTAA 2 cut(s) 36, 186
Tru9I TTAA 2 cut(s) 36, 186
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 62, 295
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 17, 192, 369
TspGWI ACGGA 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.