Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Reverse (-)

6044099 .. 6045347

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCAACTAATTCCCTTTCTCGCTCCTCTCTCCCACTCTCTCCCTCTATCTCATTTGAAGCTCAAAGCCATGGCTACTCTAGCGGCGGCCGCAGCTCGTCAACTCGCCACTTCAAGTCGCATCTCCACGGCGAGAACCTCGTCTCTCCCTTCCAATATAATCCACCGCCGCGGCCTCGCCGGCGCTGCTGATCACCATGGGCCCCCAAAGGTTAACGTCTGGCAAGACCCATTGAGCCCATCTAAATGGAAGGAAGAGCATTTTGTAATTGTCTCTTTATCTGGCTGGGGTCTACTCATCTTTGGAGGTTACAAGTTTTTCACTGGAGGCAAGGGCAAGAAAGAAGAGGTACTTCAGATTTCTTTCTCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.42

Weight (kDa)

10.35

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	292
AccII	CGCG	1 cut(s)	171
AciI	CCGC	6 cut(s)	83, 86, 90, 166, 169, 171
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	58, 114
AluBI	AGCT	2 cut(s)	61, 95
AluI	AGCT	2 cut(s)	61, 95
Alw26I	GTCTC	2 cut(s)	147, 277
AoxI	GGCC	3 cut(s)	87, 172, 200
ApaI	GGGCCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	92, 185
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	200, 201
AsuHPI	GGTGA	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	204, 239
BbvI	GCAGC	2 cut(s)	104, 172
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	147, 277
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	7 cut(s)	84, 87, 90, 93, 169, 172, 186
BlsI	GCNGC	7 cut(s)	85, 88, 91, 94, 170, 173, 187
BmgT120I	GGNCC	2 cut(s)	200, 201
BmiI	GGNNCC	2 cut(s)	202, 203
BmsI	GCATC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	69, 126, 169, 196
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	69, 126, 169, 196
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	104, 172
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	89, 174, 202
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	147, 277
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	89, 174, 202
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	204, 239
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	2 cut(s)	69, 196
BspACI	CCGC	6 cut(s)	83, 86, 90, 166, 169, 171
BspANI	GGCC	3 cut(s)	89, 174, 202
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	202, 203
BspQI	GCTCTTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	69, 126, 169, 196
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	69, 196
Bst6I	CTCTTC	2 cut(s)	249, 339
BstC8I	GCNNGC	1 cut(s)	181
BstDSI	CCRYGG	4 cut(s)	69, 126, 169, 196
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	147, 277
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 92, 180, 185
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	104, 172
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	89, 174, 202
BtgI	CCRYGG	4 cut(s)	69, 126, 169, 196
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	181
CciNI	GCGGCCGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	200, 201
Cfr42I	CCGCGG	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	70, 197
CviJI	RGCY	9 cut(s)	61, 68, 74, 89, 95, 174, 202, 237, 285
CviKI_1	RGCY	9 cut(s)	61, 68, 74, 89, 95, 174, 202, 237, 285
CviQI	GTAC	1 cut(s)	350
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	249, 339
EarI	CTCTTC	2 cut(s)	249, 339
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	69, 196
Eco24I	GRGCYC	2 cut(s)	204, 239
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	69, 196
EcoT38I	GRGCYC	2 cut(s)	204, 239
ErhI	CCWWGG	2 cut(s)	69, 196
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	73, 200
FaiI	YATR	3 cut(s)	71, 158, 198
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	2 cut(s)	69, 196
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	7 cut(s)	84, 87, 90, 93, 169, 172, 186
FriOI	GRGCYC	2 cut(s)	204, 239
Fsp4HI	GCNGC	7 cut(s)	84, 87, 90, 93, 169, 172, 186
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	7 cut(s)	84, 87, 90, 93, 169, 172, 186
GsaI	CCCAGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	89, 174, 202
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	73, 200
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	101, 214
HindII	GTYRAC	2 cut(s)	101, 214
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	101, 214, 293
Hpy188I	TCNGA	1 cut(s)	357
Hpy8I	GTNNAC	3 cut(s)	101, 214, 293
HpyAV	CCTTC	2 cut(s)	159, 244
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 92, 180, 185
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	73, 200
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	214
KspI	CCGCGG	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	190
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	193, 205, 267, 271, 309
Lsp1109I	GCAGC	2 cut(s)	104, 172
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	266, 356
MhlI	GDGCHC	2 cut(s)	204, 239
MluCI	AATT	2 cut(s)	9, 267
MnlI	CCTC	7 cut(s)	36, 54, 148, 185, 299, 320, 340
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 92, 180, 185
NaeI	GCCGGC	1 cut(s)	181
NcoI	CCATGG	2 cut(s)	69, 196
NdeII	GATC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	73, 200
NlaIV	GGNNCC	2 cut(s)	202, 203
NotI	GCGGCCGC	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	181
PkrI	GCNGC	7 cut(s)	85, 88, 91, 94, 170, 173, 187
PspFI	CCCAGC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	202, 203
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	200, 201
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	7 cut(s)	84, 87, 90, 93, 169, 172, 186
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	200, 201
SduI	GDGCHC	2 cut(s)	204, 239
SetI	ASST	7 cut(s)	63, 97, 140, 213, 219, 310, 351
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	172
SgrAI	CRCCGGYG	1 cut(s)	179
SgrBI	CCGCGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	2 cut(s)	9, 267
SsiI	CCGC	6 cut(s)	83, 86, 90, 166, 169, 171
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	2 cut(s)	69, 196
TaiI	ACGT	1 cut(s)	219
TasI	AATT	2 cut(s)	9, 267
TauI	GCSGC	5 cut(s)	86, 89, 92, 171, 174
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	92, 185
TspRI	CASTG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.