Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Forward (+)

8376059 .. 8376706

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTACTCCTTTGTGGTTCTTCAGATTCCCACCACCTTTGTTGCTTGTTCTTGCTCCATTCCTTGTATTGATTGGATTCATGGGATTTGGATTCCTCTCCATCTTCCTAGCATCTATGGTACTGATTTTCTCGACCTTTTTTTTCCCATTTTCTAAGCAAAACCCTCTTCATCTGGTTGAGAATAAGTTAGTTGAAGAAAAACTGTTCATTCCTTGCTTGGAAGATGCAAAACATCAAAGTGCTACCCCACAAGAGAAGGATGCTGAAGAAGCACAACTGAGCTCACCGGATTTGATATCAGAAAGTGAATGCCTTGATCACTTATCAACCAGTGATGATTCTGAATTAGTTGACTGGTCGTTTGGAGACAGTGTGGCTCGGAGCCCAGATTTCTCAGACGGCTCCATTTCCGACGAGGATAGCCTCATCGAAATAGCCCTCCCGGGTGGATACTATGTCGGTCACAAGGAGCATGACTCAGTGGTTAACCTGCAGCAGAAAATGCCAGGTTTGTCCATTTTTAAGCAGCATACTATATTGGAGCTTTTGGCTGAGATGAATGAGATGAATGAGGAAGAAAATTTGTTCGAAATCGACTTATCCATGGGATCCATCAAGTGTTCAAGGTTTGAGATTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.17

Weight (kDa)

4.3

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	501
AclWI	GGATC	2 cut(s)	606, 619
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	7, 288
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	197, 627, 641
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	285, 547, 644
AluI	AGCT	3 cut(s)	285, 547, 644
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	606, 619
Ama87I	CYCGRG	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	496, 529
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AsuC2I	CCSGG	2 cut(s)	446, 447
AsuHPI	GGTGA	1 cut(s)	279
AsuII	TTCGAA	1 cut(s)	591
AvaI	CYCGRG	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	611
BanII	GRGCYC	2 cut(s)	287, 389
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	508, 541
BccI	CCATC	2 cut(s)	110, 623
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	446, 447
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	497, 530
BlsI	GCNGC	2 cut(s)	498, 531
Bme1390I	CCNGG	3 cut(s)	446, 447, 510
BmeT110I	CYCGRG	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	386, 406, 613
BmrFI	CCNGG	3 cut(s)	446, 447, 510
BmsI	GCATC	3 cut(s)	122, 217, 253
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu14I	TTCGAA	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	446, 447
BsaJI	CCNNGG	2 cut(s)	445, 606
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	2 cut(s)	333, 362
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	445, 606
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	4 cut(s)	272, 411, 495, 546
BseNI	ACTGG	2 cut(s)	333, 362
BseXI	GCAGC	2 cut(s)	508, 541
BsiHKAI	GWGCWC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	290, 446
BsmAI	GTCTC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	287, 389
Bsp143I	GATC	2 cut(s)	319, 611
Bsp19I	CCATGG	1 cut(s)	606
BspCNI	CTCAG	4 cut(s)	273, 410, 494, 547
BspLI	GGNNCC	3 cut(s)	386, 406, 613
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	2 cut(s)	606, 619
BspT104I	TTCGAA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	333, 362
BssECI	CCNNGG	2 cut(s)	445, 606
BssMI	GATC	2 cut(s)	319, 611
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	207, 374
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstBI	TTCGAA	1 cut(s)	591
BstDEI	CTNAG	5 cut(s)	156, 281, 397, 481, 555
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	322, 614
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	319, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 505
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	444, 445, 508
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	508, 541
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuI	GTATCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	340, 379, 489
BveI	ACCTGC	1 cut(s)	501
Cfr9I	CCCGGG	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	122
CspCI	CAANNNNNGTGG	4 cut(s)	21, 24, 56, 59
CviAII	CATG	3 cut(s)	82, 476, 607
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	5 cut(s)	156, 281, 397, 481, 555
DpnI	GATC	2 cut(s)	321, 613
DpnII	GATC	2 cut(s)	319, 611
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	287, 389
Eco32I	GATATC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	7, 288
Eco88I	CYCGRG	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	287, 389
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	3 cut(s)	85, 479, 610
FaiI	YATR	7 cut(s)	83, 119, 459, 477, 534, 539, 608
FatI	CATG	3 cut(s)	81, 475, 606
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	497, 530
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	2 cut(s)	287, 389
Fsp4HI	GCNGC	2 cut(s)	497, 530
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	497, 530
HapII	CCGG	2 cut(s)	290, 446
Hin1II	CATG	3 cut(s)	85, 479, 610
HincII	GTYRAC	2 cut(s)	355, 490
HindII	GTYRAC	2 cut(s)	355, 490
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	5 cut(s)	27, 78, 93, 341, 479
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	290, 446
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	355, 490
Hpy188I	TCNGA	6 cut(s)	26, 304, 346, 384, 400, 415
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	355, 490
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	207, 374
HpyCH4V	TGCA	2 cut(s)	230, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 505
HpyF3I	CTNAG	5 cut(s)	156, 281, 397, 481, 555
Hsp92II	CATG	3 cut(s)	85, 479, 610
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	319, 611
LmnI	GCTCC	5 cut(s)	61, 384, 410, 472, 544
LpnPI	CCDG	9 cut(s)	161, 303, 343, 346, 402, 459, 495, 506, 522
Lsp1109I	GCAGC	2 cut(s)	508, 541
LweI	GCATC	3 cut(s)	122, 217, 253
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	2 cut(s)	321, 613
MboI	GATC	2 cut(s)	319, 611
MboII	GAAGA	7 cut(s)	13, 97, 161, 209, 236, 281, 590
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	287, 389
MluCI	AATT	2 cut(s)	347, 583
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	6 cut(s)	107, 177, 412, 437, 452, 568
MseI	TTAA	2 cut(s)	489, 525
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	290, 446
MspR9I	CCNGG	3 cut(s)	446, 447, 510
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	272, 505
NciI	CCSGG	2 cut(s)	446, 447
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	319, 611
NlaIII	CATG	3 cut(s)	85, 479, 610
NlaIV	GGNNCC	3 cut(s)	386, 406, 613
NmuCI	GTSAC	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	591
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	4 cut(s)	27, 78, 93, 341
PkrI	GCNGC	2 cut(s)	498, 531
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	386, 406, 613
PstI	CTGCAG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	489, 525
SatI	GCNGC	2 cut(s)	497, 530
Sau3AI	GATC	2 cut(s)	319, 611
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	446, 447, 510
SduI	GDGCHC	2 cut(s)	287, 389
SetI	ASST	8 cut(s)	40, 140, 287, 495, 514, 549, 632, 646
SfaNI	GCATC	3 cut(s)	122, 217, 253
SfcI	CTRYAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	591
SmaI	CCCGGG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	2 cut(s)	347, 583
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	444, 445, 508
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	207, 374
TaqI	TCGA	4 cut(s)	134, 432, 591, 597
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	2 cut(s)	347, 583
TfiI	GAWTC	4 cut(s)	27, 78, 93, 341
Tru1I	TTAA	2 cut(s)	489, 525
Tru9I	TTAA	2 cut(s)	489, 525
TscAI	CASTG	3 cut(s)	340, 379, 489
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	496, 529
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	5 cut(s)	70, 161, 199, 575, 584
TspMI	CCCGGG	1 cut(s)	445
TspRI	CASTG	3 cut(s)	340, 379, 489
XapI	RAATTY	1 cut(s)	583
XmaI	CCCGGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.