Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

9882821 .. 9883797

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATGTTTTCCGATAGCAACCAGTTAAAATTAAATAACCTCACCATGGACATTGATCTACGGCTACCTTCTGGTGAGCATGACAAAGAAGATGAAGAGCCTCATGAAATTGATAACATGTTGGAACATGAAGAAAAAGTGCACAATGGACATATAGAGAGTGGAAACATTGAGGATGTTGGAGATGAAGTACTTGCTGAAGATGGCGGGGATTTGAATTCTCCTACACCAGATATTGTAGTGTTTAAAGAGGATACAAATCTTGAGCCGCTTTTTGGTATGGAGTTTGAATCACATGGGGAAGCATACTCTTTTTATCAGGAGTATGCTCGGTCTATGGGGTTCAACACCGCAATCCAAAACAGCCGCCGTTCAAAGACATCGAGAGAATTTATTGATGCAAAATTTGCTTGTTCTAGATATGGGACCAAGCGCGAGTATGACAAATCGTATAATAGACCACGTGCCAGACAGAACAAGCAAGACCCAGAAAATCCGACTGGTCGGCGTTCATGTTCAAAGACAGACTGCAAAGCTTCGATGCATGTGAAGAGACGACCAGATGGTAAATGGGTTATACATAATTTTGTGAAGGAGCATAACCACGAGCTTTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAAAATGTACGCTGCAATGGCTAGACAGTTTGCTGAATACAAAAATGTGGTTGGTCTAAAAAGTGATTCCAAAAATCCTTTTGATAAAGGTAGGAATTTGGCATTAGAGGCAGGAGATTTGAAGATTTTGCTCGAGTTTTTCACGCAGATGCAGAATATGAATTCCAACTTCTTCTATTCTATAGATCGATGGGAGAAGACCAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

285

Amino Acids

32.84

Weight (kDa)

5.55

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	104 - 206	1.5e-25	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	435
AciI	CCGC	4 cut(s)	207, 269, 351, 367
AcsI	RAATTY	5 cut(s)	217, 389, 404, 739, 805
AcuI	CTGAAG	1 cut(s)	219
AcvI	CACGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	192, 653
AfiI	CCNNNNNNNGG	2 cut(s)	46, 275
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	217, 290, 346, 375, 519, 766
AluBI	AGCT	2 cut(s)	536, 610
AluI	AGCT	2 cut(s)	536, 610
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	547
Alw44I	GTGCAC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	776
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	5 cut(s)	217, 389, 404, 739, 805
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	34, 86
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	3 cut(s)	197, 557, 828
BceAI	ACGGC	2 cut(s)	77, 354
BciVI	GTATCC	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	417, 666
BfmI	CTRYAG	1 cut(s)	825
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	3 cut(s)	269, 367, 657
BlsI	GCNGC	3 cut(s)	270, 368, 658
BmcAI	AGTACT	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	3 cut(s)	388, 531, 783
BpiI	GAAGAC	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	832
BsaAI	YACGTR	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 275
Bse1I	ACTGG	2 cut(s)	22, 505
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	46, 275
BseMI	GCAATG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	22, 505
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	435
BshVI	ATCGAT	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	46, 275
BsmAI	GTCTC	1 cut(s)	547
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	55, 829
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	4 cut(s)	207, 269, 351, 367
BspDI	ATCGAT	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	22, 505
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	55, 829
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	2 cut(s)	90, 545
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	58, 832
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	55, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
BstNSI	RCATGY	2 cut(s)	121, 548
BstSFI	CTRYAG	1 cut(s)	825
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	848
Bsu15I	ATCGAT	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	247
BsuTUI	ATCGAT	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	637
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	191, 652
CviAII	CATG	8 cut(s)	46, 80, 104, 118, 128, 296, 513, 545
CviJI	RGCY	9 cut(s)	64, 100, 268, 366, 536, 610, 620, 665, 852
CviKI_1	RGCY	9 cut(s)	64, 100, 268, 366, 536, 610, 620, 665, 852
CviQI	GTAC	2 cut(s)	191, 652
DpnI	GATC	2 cut(s)	57, 831
DpnII	GATC	2 cut(s)	55, 829
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	90, 545
EarI	CTCTTC	2 cut(s)	90, 545
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	219
Eco72I	CACGTG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	776
EcoRI	GAATTC	2 cut(s)	217, 805
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	8 cut(s)	49, 83, 107, 121, 131, 299, 516, 548
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	8 cut(s)	45, 79, 103, 117, 127, 295, 512, 544
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	269, 367, 657
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	269, 367, 657
FspBI	CTAG	2 cut(s)	417, 666
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	269, 367, 657
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	8 cut(s)	49, 83, 107, 121, 131, 299, 516, 548
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	290, 710
HphI	GGTGA	2 cut(s)	34, 86
Hpy166II	GTNNAC	2 cut(s)	142, 635
Hpy188I	TCNGA	2 cut(s)	13, 498
Hpy188III	TCNNGA	5 cut(s)	104, 263, 320, 384, 417
Hpy8I	GTNNAC	2 cut(s)	142, 635
HpyAV	CCTTC	2 cut(s)	78, 586
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	142, 401, 531, 544, 659, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	8 cut(s)	49, 83, 107, 121, 131, 299, 516, 548
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	55, 829
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	3 cut(s)	388, 531, 783
MaeI	CTAG	2 cut(s)	417, 666
MaeII	ACGT	1 cut(s)	463
MalI	GATC	2 cut(s)	57, 831
MboI	GATC	2 cut(s)	55, 829
MboII	GAAGA	8 cut(s)	101, 107, 143, 212, 562, 778, 808, 853
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	8 cut(s)	29, 108, 217, 389, 404, 583, 739, 805
MmeI	TCCRAC	4 cut(s)	102, 160, 521, 834
MnlI	CCTC	5 cut(s)	50, 111, 166, 244, 745
Mph1103I	ATGCAT	1 cut(s)	546
MseI	TTAA	3 cut(s)	26, 32, 246
MslI	CAYNNNNRTG	1 cut(s)	791
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	55, 829
NlaIII	CATG	8 cut(s)	49, 83, 107, 121, 131, 299, 516, 548
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	2 cut(s)	121, 548
PaeR7I	CTCGAG	1 cut(s)	776
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	290, 710
PkrI	GCNGC	3 cut(s)	270, 368, 658
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	464
PscI	ACATGT	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	426
PspXI	VCTCGAGB	1 cut(s)	776
RsaI	GTAC	2 cut(s)	192, 653
RsaNI	GTAC	2 cut(s)	191, 652
RseI	CAYNNNNRTG	1 cut(s)	791
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	26, 32, 246
SatI	GCNGC	3 cut(s)	269, 367, 657
Sau3AI	GATC	2 cut(s)	55, 829
Sau96I	GGNCC	1 cut(s)	426
ScaI	AGTACT	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	42, 70, 466, 538, 612, 736
SfaNI	GCATC	3 cut(s)	388, 531, 783
SfcI	CTRYAG	1 cut(s)	825
Sfr274I	CTCGAG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	2 cut(s)	263, 776
SmoI	CTYRAG	2 cut(s)	263, 776
Sse9I	AATT	8 cut(s)	29, 108, 217, 389, 404, 583, 739, 805
SsiI	CCGC	4 cut(s)	207, 269, 351, 367
SspMI	CTAG	2 cut(s)	417, 666
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	4 cut(s)	383, 539, 777, 832
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	8 cut(s)	29, 108, 217, 389, 404, 583, 739, 805
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	2 cut(s)	271, 369
TfiI	GAWTC	2 cut(s)	290, 710
Tru1I	TTAA	3 cut(s)	26, 32, 246
Tru9I	TTAA	3 cut(s)	26, 32, 246
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	1 cut(s)	656
TspDTI	ATGAA	6 cut(s)	108, 120, 144, 201, 501, 818
TspRI	CASTG	1 cut(s)	637
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	5 cut(s)	217, 389, 404, 739, 805
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	2 cut(s)	121, 548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XhoI	CTCGAG	1 cut(s)	776
XspI	CTAG	2 cut(s)	417, 666
ZrmI	AGTACT	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.