Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002641

Physical Location & Seq

Genomic Coordinates Forward (+)

16652045 .. 16654097

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTACAAAGCAGCCTCCCGACTCAGGTCCCTCAAGGGCCGGGGAACTTTGGGGGCCACCCGGTTTGCAACAAGTGCAGCTGTATCGAAGCCATCATCTGGGGGTCTCTTTAGCTGGCTGACGGGGGAGAGCTCAAGTGCTCTTCCTCCGTTGGAAACCCAACTCCCAGGTGTTAACCTTCCTCCTCCAGTACCTGATTATGTTGAACCAAGCAAGACGCAGATTACAACTCTTTCTAATGGTGTCAAAATAGCTTCAGAAACTTCAACGAGTGCTGCAGCGTCCATTGGAATATATGTGGATTCTGGTTCCATATATGAGACACCAGTATCCAGTGGTGCCTCACACTTGCTAGAACGATTGGCTTTTAAGAGTACAACCAACCGGAGCCACTTACGCATTGTGAGAGAAGTGGAAGCAATCGGTGGTCACATAGGAGCCAGTGCCTCTAGGGAGCAAATGGGATATACTTTTGATGCTATCAAGACCTATGTTCCCCAGATGGTGGAACTACTTGTTGACTCTGTGAGGAACCCTGCCTTCTTGGAATGGGAAGTCAATGAAGAGCTCAATAAGGTGCGGGCAGAGATTGGAGAACTTTCTAAGAATCCGCAGGGCTTACTCTTGGAGGCGATTCATTCTGCTGGTTATTCTGGTGCATTGGCTAATCCTCTTTTGGCTTCTGAATCATCACTGAACAGATTGAATGGCAGCATCTTGGAGCAGTTCATTGCTGAAAATTATACTGCTCCTCGTATAGTTCTTGCAGCATCTGGGGTTGATCGATCAGGAGATTGTATCCATTGCAGAACCACTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0005746 GO:0005750 GO:0005758 GO:0005759 GO:0005773 GO:0005774 GO:0006508 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0016787 GO:0017076 GO:0019538 GO:0019866 GO:0019867 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031970 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034982 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0045275 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070011 GO:0070013 GO:0070069 GO:0070469 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

275

Amino Acids

29.09

Weight (kDa)

6.23

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51980 AT1G51980 AT3G16480
fragaria_vesca	FvH4_1g06540 FvH4_1g06540 FvH4_1g06540 FvH4_6g32600 FvH4_6g32600
malus_domestica	MD02G1068800.v1.1 MD09G1200100.v1.1 MD17G1181200.v1.1
prunus_persica	Prupe.3G056700_v2.0.a1 Prupe.7G216900_v2.0.a1
pyrus_communis	pycom02g05450 pycom09g11770 pycom17g19060
rosa_chinensis	RchiOBHm_Chr2g0092291 RchiOBHm_Chr2g0141051
rosa_laevigata	RLG00000016294 RLG00000019911
rosa_multiflora	Rmu_co8416335.1_g000001 Rmu_sc0003289.1_g000021 Rmu_sc0004769.1_g000017 Rmu_sc0012897.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104250 Rroxscaffold_2G00149290
rosa_rugosa	Rorug02G0024700 Rorug02G0366400
rosa_samantha	Rh2AG070400 Rh2AG417800 Rh2BG069900 Rh2BG427700 Rh2CG071100 Rh2CG356200 Rh2CG404100 Rh2DG068900 Rh2DG437200
rosa_wichuraiana	Rw2G006190 Rw2G034200 Rw2G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	2 cut(s)	98, 505
AciI	CCGC	2 cut(s)	580, 611
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	5, 192, 376
AfiI	CCNNNNNNNGG	3 cut(s)	24, 98, 505
AgsI	TTSAA	3 cut(s)	206, 267, 706
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	5 cut(s)	80, 114, 132, 254, 568
AluI	AGCT	5 cut(s)	80, 114, 132, 254, 568
Alw21I	GWGCWC	3 cut(s)	134, 142, 570
Alw26I	GTCTC	2 cut(s)	110, 314
AlwNI	CAGNNNCTG	2 cut(s)	194, 773
AoxI	GGCC	2 cut(s)	37, 54
ApeKI	GCWGC	6 cut(s)	11, 77, 275, 278, 711, 767
Asp700I	GAANNNNTTC	1 cut(s)	814
AspS9I	GGNCC	3 cut(s)	27, 37, 54
AsuC2I	CCSGG	2 cut(s)	41, 61
AvaII	GGWCC	1 cut(s)	27
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	134, 570
Bbv12I	GWGCWC	3 cut(s)	134, 142, 570
BbvI	GCAGC	6 cut(s)	23, 89, 262, 290, 723, 779
BccI	CCATC	2 cut(s)	100, 496
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	2 cut(s)	340, 809
BcnI	CCSGG	2 cut(s)	41, 61
BcoDI	GTCTC	2 cut(s)	110, 314
BfaI	CTAG	2 cut(s)	353, 450
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	2 cut(s)	340, 809
BisI	GCNGC	6 cut(s)	12, 78, 276, 279, 712, 768
BlsI	GCNGC	6 cut(s)	13, 79, 277, 280, 713, 769
Bme1390I	CCNGG	3 cut(s)	41, 61, 168
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	27, 37, 54
BmiI	GGNNCC	7 cut(s)	29, 55, 310, 340, 389, 439, 533
BmrFI	CCNGG	3 cut(s)	41, 61, 168
BmsI	GCATC	3 cut(s)	466, 723, 779
BoxI	GACNNNNGTC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	17, 118
BpuMI	CCSGG	2 cut(s)	41, 61
Bsa29I	ATCGAT	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	40, 166
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 98, 505
Bse1I	ACTGG	4 cut(s)	188, 326, 333, 441
Bse3DI	GCAATG	2 cut(s)	729, 802
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	40, 166
BseLI	CCNNNNNNNGG	3 cut(s)	24, 98, 505
BseMI	GCAATG	2 cut(s)	729, 802
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	4 cut(s)	188, 326, 333, 441
BseRI	GAGGAG	2 cut(s)	174, 741
BseXI	GCAGC	6 cut(s)	23, 89, 262, 290, 723, 779
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	39, 56
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	784
BsiHKAI	GWGCWC	3 cut(s)	134, 142, 570
BsiSI	CCGG	3 cut(s)	40, 61, 385
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	24, 98, 505
BsmAI	GTCTC	2 cut(s)	110, 314
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	39, 56
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	134, 142, 570
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	781, 785
BspACI	CCGC	2 cut(s)	580, 611
BspANI	GGCC	2 cut(s)	39, 56
BspCNI	CTCAG	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	784
BspLI	GGNNCC	7 cut(s)	29, 55, 310, 340, 389, 439, 533
BspMAI	CTGCAG	1 cut(s)	280
BspQI	GCTCTTC	2 cut(s)	147, 558
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	729, 802
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	4 cut(s)	188, 326, 333, 441
BssECI	CCNNGG	2 cut(s)	40, 166
BssMI	GATC	2 cut(s)	781, 785
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	147, 558
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	116, 582
BstDEI	CTNAG	2 cut(s)	23, 603
BstKTI	GATC	2 cut(s)	784, 788
BstMAI	GTCTC	2 cut(s)	110, 314
BstMBI	GATC	2 cut(s)	781, 785
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 396
BstNI	CCWGG	1 cut(s)	168
BstPAI	GACNNNNGTC	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	39, 59, 166
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	23, 89, 262, 290, 723, 779
Bsu15I	ATCGAT	1 cut(s)	784
BsuI	GTATCC	2 cut(s)	340, 809
BsuRI	GGCC	2 cut(s)	39, 56
BsuTUI	ATCGAT	1 cut(s)	784
BtsIMutI	CAGTG	3 cut(s)	340, 448, 692
Cac8I	GCNNGC	2 cut(s)	116, 582
CaiI	CAGNNNCTG	2 cut(s)	194, 773
Cfr13I	GGNCC	3 cut(s)	27, 37, 54
ClaI	ATCGAT	1 cut(s)	784
CseI	GACGC	2 cut(s)	226, 270
Csp6I	GTAC	3 cut(s)	4, 191, 375
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviQI	GTAC	3 cut(s)	4, 191, 375
DdeI	CTNAG	2 cut(s)	23, 603
DpnI	GATC	2 cut(s)	783, 787
DpnII	GATC	2 cut(s)	781, 785
Eam1104I	CTCTTC	2 cut(s)	147, 558
EarI	CTCTTC	2 cut(s)	147, 558
Ecl136II	GAGCTC	2 cut(s)	132, 568
Eco24I	GRGCYC	2 cut(s)	134, 570
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	2 cut(s)	132, 568
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	2 cut(s)	132, 568
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	134, 570
FaqI	GGGAC	1 cut(s)	13
FauI	CCCGC	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	12, 78, 276, 279, 712, 768
FriOI	GRGCYC	2 cut(s)	134, 570
Fsp4HI	GCNGC	6 cut(s)	12, 78, 276, 279, 712, 768
FspBI	CTAG	2 cut(s)	353, 450
GluI	GCNGC	6 cut(s)	12, 78, 276, 279, 712, 768
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	39, 56
HapII	CCGG	3 cut(s)	40, 61, 385
HgaI	GACGC	2 cut(s)	226, 270
HincII	GTYRAC	2 cut(s)	175, 520
HindII	GTYRAC	2 cut(s)	175, 520
HinfI	GANTC	6 cut(s)	21, 302, 521, 607, 634, 686
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	3 cut(s)	40, 61, 385
Hpy166II	GTNNAC	2 cut(s)	175, 520
Hpy188I	TCNGA	3 cut(s)	259, 685, 824
Hpy188III	TCNNGA	3 cut(s)	18, 484, 789
Hpy8I	GTNNAC	2 cut(s)	175, 520
HpyAV	CCTTC	2 cut(s)	188, 550
HpyCH4V	TGCA	6 cut(s)	68, 77, 278, 659, 767, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 396
HpyF3I	CTNAG	2 cut(s)	23, 603
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	781, 785
LguI	GCTCTTC	2 cut(s)	147, 558
LmnI	GCTCC	5 cut(s)	387, 437, 454, 721, 754
Lsp1109I	GCAGC	6 cut(s)	23, 89, 262, 290, 723, 779
LweI	GCATC	3 cut(s)	466, 723, 779
MaeI	CTAG	2 cut(s)	353, 450
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	2 cut(s)	783, 787
MboI	GATC	2 cut(s)	781, 785
MboII	GAAGA	2 cut(s)	134, 575
MhlI	GDGCHC	3 cut(s)	134, 142, 570
MluCI	AATT	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	15, 515
MmeI	TCCRAC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	814
MseI	TTAA	2 cut(s)	174, 369
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	3 cut(s)	40, 61, 385
MspR9I	CCNGG	3 cut(s)	41, 61, 168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	74, 396
NciI	CCSGG	2 cut(s)	41, 61
NdeII	GATC	2 cut(s)	781, 785
NlaIV	GGNNCC	7 cut(s)	29, 55, 310, 340, 389, 439, 533
NmuCI	GTSAC	1 cut(s)	428
PciSI	GCTCTTC	2 cut(s)	147, 558
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	4 cut(s)	302, 607, 634, 686
PflMI	CCANNNNNTGG	2 cut(s)	98, 505
PkrI	GCNGC	6 cut(s)	13, 79, 277, 280, 713, 769
PleI	GAGTC	2 cut(s)	15, 515
PpsI	GAGTC	2 cut(s)	15, 515
PpuMI	RGGWCCY	1 cut(s)	27
PshAI	GACNNNNGTC	1 cut(s)	25
Psp124BI	GAGCTC	2 cut(s)	134, 570
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	7 cut(s)	29, 55, 310, 340, 389, 439, 533
PspPI	GGNCC	3 cut(s)	27, 37, 54
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	194, 773
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	3 cut(s)	5, 192, 376
RsaNI	GTAC	3 cut(s)	4, 191, 375
SacI	GAGCTC	2 cut(s)	134, 570
SapI	GCTCTTC	2 cut(s)	147, 558
SaqAI	TTAA	2 cut(s)	174, 369
SatI	GCNGC	6 cut(s)	12, 78, 276, 279, 712, 768
Sau3AI	GATC	2 cut(s)	781, 785
Sau96I	GGNCC	3 cut(s)	27, 37, 54
SchI	GAGTC	2 cut(s)	15, 515
ScrFI	CCNGG	3 cut(s)	41, 61, 168
SduI	GDGCHC	3 cut(s)	134, 142, 570
SfaNI	GCATC	3 cut(s)	466, 723, 779
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	32, 133
SmoI	CTYRAG	2 cut(s)	32, 133
Sse9I	AATT	1 cut(s)	739
SsiI	CCGC	2 cut(s)	580, 611
SspMI	CTAG	2 cut(s)	353, 450
SstI	GAGCTC	2 cut(s)	134, 570
StyD4I	CCNGG	3 cut(s)	39, 59, 166
TaqI	TCGA	2 cut(s)	86, 784
TasI	AATT	1 cut(s)	739
TatI	WGTACW	2 cut(s)	3, 374
TfiI	GAWTC	4 cut(s)	302, 607, 634, 686
Tru1I	TTAA	2 cut(s)	174, 369
Tru9I	TTAA	2 cut(s)	174, 369
TscAI	CASTG	3 cut(s)	340, 448, 699
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	6 cut(s)	11, 77, 275, 278, 711, 767
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	576, 626, 718
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	340, 448, 699
Van91I	CCANNNNNTGG	2 cut(s)	98, 505
VpaK11BI	GGWCC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	2 cut(s)	353, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.