Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416335.1

Orthogroup ID

OG0002641

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1360

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgtacaagaccgccgcctcacgcctcagggctctcaagggccggacaggcattaggggagtggctagattttcaacattgggtgaagtttcaagtccggctgccgctgccacgaagccttcttggtctcctttgggtggtttgtttggttggctgaccggaggacggtccaggtctatgcctccactggatttcccacttgaaggtgtcaagtccccacctgcattgccggattatgttcaaccggagaagcccaagattacgaccctgcccaatggtgtcaaaatagcctctgtgaagtcagaggtacctacagcttccataggtttatatgttaattgtggttcagtctatgagacagcagagtcatctggaacatcacacctgctggagcgtatggctttcaagagcacgagaaaccgcagtcatttgcgtattgtgcgggaggtggaggcgattggtggcaatgtgcaagcatcagcttctcgggagcagatgagttacaccattacttctctgaagacttatgtccctgaaatggtagagctgcttcttgactcggttcggaatcctgttttccttgagtgggaagtgaatgaggagcttctccgggtgaaagatgatattaatgaagcctccaaaaaccctgaagcccttgttttggaagcagttcactctgttggttacaagggtggattggcgaatccactcttagcccaagaatcttcgattagtagactagatagtgaaattttggaggaattcgttgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

257

Amino Acids

27.86

Weight (kDa)

6.86

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51980 AT1G51980 AT3G16480
fragaria_vesca	FvH4_1g06540 FvH4_1g06540 FvH4_1g06540 FvH4_6g32600 FvH4_6g32600
malus_domestica	MD02G1068800.v1.1 MD09G1200100.v1.1 MD17G1181200.v1.1
prunus_persica	Prupe.3G056700_v2.0.a1 Prupe.7G216900_v2.0.a1
pyrus_communis	pycom02g05450 pycom09g11770 pycom17g19060
rosa_chinensis	RchiOBHm_Chr2g0092291 RchiOBHm_Chr2g0141051
rosa_laevigata	RLG00000016294 RLG00000019911
rosa_multiflora	Rmu_co8416335.1_g000001 Rmu_sc0003289.1_g000021 Rmu_sc0004769.1_g000017 Rmu_sc0012897.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104250 Rroxscaffold_2G00149290
rosa_rugosa	Rorug02G0024700 Rorug02G0366400
rosa_samantha	Rh2AG070400 Rh2AG417800 Rh2BG069900 Rh2BG427700 Rh2CG071100 Rh2CG356200 Rh2CG404100 Rh2DG068900 Rh2DG437200
rosa_wichuraiana	Rw2G006190 Rw2G034200 Rw2G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	229, 393
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	229, 393
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	736
AciI	CCGC	5 cut(s)	12, 15, 105, 421, 442
AcsI	RAATTY	2 cut(s)	750, 761
AcuI	CTGAAG	2 cut(s)	539, 669
AfaI	GTAC	2 cut(s)	5, 309
AfiI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 538, 586, 661
AgsI	TTSAA	5 cut(s)	75, 93, 203, 242, 406
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	317, 482, 547, 604
AluI	AGCT	4 cut(s)	317, 482, 547, 604
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	132, 350
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	101, 107, 547
ApoI	RAATTY	2 cut(s)	750, 761
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	669
Asp718I	GGTACC	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	40, 168
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	95, 625
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	88, 94, 534
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	132, 350
BfaI	CTAG	2 cut(s)	66, 740
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	2 cut(s)	229, 393
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
BlsI	GCNGC	5 cut(s)	16, 103, 106, 109, 549
Bme1390I	CCNGG	2 cut(s)	172, 611
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	40, 168
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	172, 611
BmsI	GCATC	1 cut(s)	485
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	20, 602
BpuMI	CCSGG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	132
BsaWI	WCCGGW	2 cut(s)	158, 244
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 538, 586, 661
Bse1I	ACTGG	1 cut(s)	192
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	2 cut(s)	224, 472
BseBI	CCWGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 538, 586, 661
BseMI	GCAATG	2 cut(s)	224, 472
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	3 cut(s)	88, 94, 534
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	6 cut(s)	43, 98, 159, 230, 245, 610
BslFI	GGGAC	2 cut(s)	199, 515
BslI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 538, 586, 661
BsmAI	GTCTC	2 cut(s)	132, 350
BsmFI	GGGAC	2 cut(s)	199, 515
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	34, 413
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	5 cut(s)	12, 15, 105, 421, 442
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	2 cut(s)	229, 393
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	224, 472
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	26, 712
BstMAI	GTCTC	2 cut(s)	132, 350
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
BstNI	CCWGG	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	170, 609
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	88, 94, 534
BstV2I	GAAGAC	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	2 cut(s)	229, 393
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	40, 168
Csp6I	GTAC	2 cut(s)	4, 308
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviQI	GTAC	2 cut(s)	4, 308
DdeI	CTNAG	2 cut(s)	26, 712
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	539, 669
Eco81I	CCTNAGG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	34
FaiI	YATR	8 cut(s)	179, 237, 323, 331, 333, 354, 398, 528
FaqI	GGGAC	2 cut(s)	199, 515
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
FspBI	CTAG	2 cut(s)	66, 740
GluI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	6 cut(s)	43, 98, 159, 230, 245, 610
HinfI	GANTC	5 cut(s)	365, 557, 568, 703, 722
HpaII	CCGG	6 cut(s)	43, 98, 159, 230, 245, 610
HphI	GGTGA	2 cut(s)	95, 625
Hpy166II	GTNNAC	2 cut(s)	673, 737
Hpy188I	TCNGA	3 cut(s)	304, 519, 567
Hpy188III	TCNNGA	4 cut(s)	372, 406, 488, 554
Hpy8I	GTNNAC	2 cut(s)	673, 737
HpyAV	CCTTC	2 cut(s)	129, 197
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	224, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
HpyF3I	CTNAG	2 cut(s)	26, 712
KpnI	GGTACC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	391, 490, 601
Lsp1109I	GCAGC	3 cut(s)	88, 94, 534
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	66, 740
MaeIII	GTNAC	2 cut(s)	500, 683
MboII	GAAGA	2 cut(s)	532, 717
MhlI	GDGCHC	2 cut(s)	34, 413
MluCI	AATT	3 cut(s)	337, 750, 761
MlyI	GAGTC	2 cut(s)	374, 551
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	2 cut(s)	336, 627
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	6 cut(s)	43, 98, 159, 230, 245, 610
MspR9I	CCNGG	2 cut(s)	172, 611
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
NciI	CCSGG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	309
PaqCI	CACCTGC	2 cut(s)	229, 393
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	568, 703, 722
PkrI	GCNGC	5 cut(s)	16, 103, 106, 109, 549
PleI	GAGTC	2 cut(s)	373, 551
PpsI	GAGTC	2 cut(s)	373, 551
PshAI	GACNNNNGTC	1 cut(s)	527
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	40, 168
RsaI	GTAC	2 cut(s)	5, 309
RsaNI	GTAC	2 cut(s)	4, 308
SaqAI	TTAA	2 cut(s)	336, 627
SatI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
Sau96I	GGNCC	2 cut(s)	40, 168
SchI	GAGTC	2 cut(s)	374, 551
ScrFI	CCNGG	2 cut(s)	172, 611
SduI	GDGCHC	2 cut(s)	34, 413
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	35, 581
SmoI	CTYRAG	2 cut(s)	35, 581
Sse9I	AATT	3 cut(s)	337, 750, 761
SsiI	CCGC	5 cut(s)	12, 15, 105, 421, 442
SspMI	CTAG	2 cut(s)	66, 740
StyD4I	CCNGG	2 cut(s)	170, 609
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	728
TasI	AATT	3 cut(s)	337, 750, 761
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	17, 107
TfiI	GAWTC	3 cut(s)	568, 703, 722
Tru1I	TTAA	2 cut(s)	336, 627
Tru9I	TTAA	2 cut(s)	336, 627
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	3 cut(s)	101, 107, 547
TspDTI	ATGAA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	168
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	2 cut(s)	750, 761
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	66, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.